(40 nodes) Secretory granule membrane network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106535273	Synaptotagmin-2-like isoform X1. (434 aa)
	tekt3	Tektin-3. (487 aa)
	LOC106535204	Inositol 1,4,5-trisphosphate receptor type 1-like. (232 aa)
	trip11	Thyroid receptor-interacting protein 11. (1953 aa)
	vamp8	Vesicle-associated membrane protein 8. (122 aa)
	pla1a	Phospholipase A1 member A. (457 aa)
	scg3	Secretogranin-3. (490 aa)
	LOC106527884	LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 3-like. (2662 aa)
	LOC106527775	Membrane cofactor protein-like. (304 aa)
	LOC106527736	Solute carrier family 17 member 9-like. (453 aa)
	tmed2	Transmembrane emp24 domain-containing protein 2 isoform X2. (207 aa)
	LOC106527163	Inositol 1,4,5-trisphosphate receptor type 1-like. (2782 aa)
	LOC106525250	Cytochrome b561. (252 aa)
	LOC106523650	Coiled-coil domain-containing protein 136-like isoform X1. (468 aa)
	slc17a9	Solute carrier family 17 member 9. (465 aa)
	pam	Peptidyl-glycine alpha-amidating monooxygenase. (856 aa)
	LOC106522035	Vesicle-associated membrane protein 8-like isoform X1. (117 aa)
	LOC106519286	Synaptotagmin-2-like isoform X1. (431 aa)
	vps13b	Vacuolar protein sorting-associated protein 13B. (4046 aa)
	rab26	Ras-related protein Rab-26 isoform X1. (252 aa)
	LOC106518246	Synaptotagmin-1-like isoform X1. (422 aa)
	LOC106518640	Inositol 1,4,5-trisphosphate receptor type 1-like. (134 aa)
	LOC106518058	Inositol 1,4,5-trisphosphate receptor type 1-like. (2739 aa)
	LOC106517961	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (183 aa)
	LOC106517435	Synaptotagmin-1-like. (428 aa)
	itpr2	Inositol 1,4,5-trisphosphate receptor type 2 isoform X1. (2687 aa)
	scamp1	Secretory carrier-associated membrane protein. (337 aa)
	dbh	Dopamine beta-hydroxylase. (614 aa)
	syt1	Synaptotagmin-1. (403 aa)
	LOC106513658	Secretory carrier-associated membrane protein. (343 aa)
	LOC106513619	Uncharacterized protein LOC106513619. (303 aa)
	stbd1	Starch-binding domain-containing protein 1. (860 aa)
	LOC106513186	Synaptotagmin-9-like. (563 aa)
	LOC106512276	DBH-like monooxygenase protein 2 homolog. (156 aa)
	LOC106512101	Inositol 1,4,5-trisphosphate receptor type 3-like. (382 aa)
	LOC106535294	Coiled-coil domain-containing protein 136-like. (421 aa)
	LOC106535489	Thyroid receptor-interacting protein 11-like. (239 aa)
	LOC106535805	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (222 aa)
	LOC106536968	Synaptotagmin-9-like. (527 aa)
	LOC106535967	Basigin-like isoform X1. (272 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106513186	LOC106517435	A0A2I4APC6	A0A2I4B7M1	Synaptotagmin-9-like.	Synaptotagmin-1-like.	0.446
LOC106513186	LOC106518246	A0A2I4APC6	A0A2I4BAU9	Synaptotagmin-9-like.	Synaptotagmin-1-like isoform X1.	0.445
LOC106513186	LOC106519286	A0A2I4APC6	A0A2I4BF17	Synaptotagmin-9-like.	Synaptotagmin-2-like isoform X1.	0.435
LOC106513186	LOC106522035	A0A2I4APC6	A0A2I4BRF1	Synaptotagmin-9-like.	Vesicle-associated membrane protein 8-like isoform X1.	0.430
LOC106513186	LOC106535273	A0A2I4APC6	A0A2I4D635	Synaptotagmin-9-like.	Synaptotagmin-2-like isoform X1.	0.449
LOC106513186	syt1	A0A2I4APC6	A0A2I4AU13	Synaptotagmin-9-like.	Synaptotagmin-1.	0.425
LOC106513186	vamp8	A0A2I4APC6	A0A2I4CUU8	Synaptotagmin-9-like.	Vesicle-associated membrane protein 8.	0.430
LOC106517435	LOC106513186	A0A2I4B7M1	A0A2I4APC6	Synaptotagmin-1-like.	Synaptotagmin-9-like.	0.446
LOC106517435	LOC106522035	A0A2I4B7M1	A0A2I4BRF1	Synaptotagmin-1-like.	Vesicle-associated membrane protein 8-like isoform X1.	0.461
LOC106517435	LOC106536968	A0A2I4B7M1	A0A2I4DC31	Synaptotagmin-1-like.	Synaptotagmin-9-like.	0.446
LOC106517435	vamp8	A0A2I4B7M1	A0A2I4CUU8	Synaptotagmin-1-like.	Vesicle-associated membrane protein 8.	0.461
LOC106518058	LOC106527163	A0A2I4BA03	A0A2I4CBP5	Inositol 1,4,5-trisphosphate receptor type 1-like.	Inositol 1,4,5-trisphosphate receptor type 1-like.	0.900
LOC106518246	LOC106513186	A0A2I4BAU9	A0A2I4APC6	Synaptotagmin-1-like isoform X1.	Synaptotagmin-9-like.	0.445
LOC106518246	LOC106522035	A0A2I4BAU9	A0A2I4BRF1	Synaptotagmin-1-like isoform X1.	Vesicle-associated membrane protein 8-like isoform X1.	0.461
LOC106518246	LOC106536968	A0A2I4BAU9	A0A2I4DC31	Synaptotagmin-1-like isoform X1.	Synaptotagmin-9-like.	0.445
LOC106518246	vamp8	A0A2I4BAU9	A0A2I4CUU8	Synaptotagmin-1-like isoform X1.	Vesicle-associated membrane protein 8.	0.461
LOC106518640	LOC106535204	A0A2I4BCJ1	A0A2I4D5W3	Inositol 1,4,5-trisphosphate receptor type 1-like.	Inositol 1,4,5-trisphosphate receptor type 1-like.	0.454
LOC106519286	LOC106513186	A0A2I4BF17	A0A2I4APC6	Synaptotagmin-2-like isoform X1.	Synaptotagmin-9-like.	0.435
LOC106519286	LOC106522035	A0A2I4BF17	A0A2I4BRF1	Synaptotagmin-2-like isoform X1.	Vesicle-associated membrane protein 8-like isoform X1.	0.461
LOC106519286	LOC106536968	A0A2I4BF17	A0A2I4DC31	Synaptotagmin-2-like isoform X1.	Synaptotagmin-9-like.	0.435