STRINGSTRING
uba52 uba52 LOC106514957 LOC106514957 LOC106518873 LOC106518873 LOC106523318 LOC106523318 sumo2 sumo2 atg12 atg12 LOC106518458 LOC106518458 LOC106536995 LOC106536995 LOC106515271 LOC106515271 nfatc2ip nfatc2ip urm1 urm1 sumo1 sumo1 ubl5 ubl5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uba52ubiquitin-60S ribosomal protein L40. (128 aa)
LOC106514957NEDD8-like. (90 aa)
LOC106518873Ubiquitin-like. (76 aa)
LOC106523318Small ubiquitin-related modifier. (94 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
LOC106518458Small ubiquitin-related modifier. (94 aa)
LOC106536995NEDD8. (89 aa)
LOC106515271Small ubiquitin-related modifier. (96 aa)
nfatc2ipNFATC2-interacting protein. (327 aa)
urm1Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically [...] (106 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
ubl5Ubiquitin-like protein 5. (73 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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