(10 nodes) Dorsal aorta development network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106516268	Neurogenic locus notch homolog protein 1-like. (2471 aa)
	LOC106536703	Serum response factor-like. (519 aa)
	LOC106534674	Angiomotin-like 2a. (685 aa)
	LOC106528756	Neurogenic locus notch homolog protein 1-like. (2518 aa)
	LOC106527456	Angiomotin-like 2a. (684 aa)
	ngfr	Tumor necrosis factor receptor superfamily member 16. (351 aa)
	LOC106524215	Hairy/enhancer-of-split related with YRPW motif protein 2-like. (252 aa)
	srf	Serum response factor isoform X1. (485 aa)
	LOC106520416	Homeobox protein Nkx-3.1-like. (193 aa)
	LOC106510847	Serum response factor-like. (385 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510847	LOC106536703	A0A2I4AHR9	A0A2I4DB71	Serum response factor-like.	Serum response factor-like.	0.902
LOC106510847	srf	A0A2I4AHR9	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.901
LOC106516268	LOC106524215	A0A2I4B2P1	A0A2I4C0A7	Neurogenic locus notch homolog protein 1-like.	Hairy/enhancer-of-split related with YRPW motif protein 2-like.	0.455
LOC106524215	LOC106516268	A0A2I4C0A7	A0A2I4B2P1	Hairy/enhancer-of-split related with YRPW motif protein 2-like.	Neurogenic locus notch homolog protein 1-like.	0.455
LOC106524215	LOC106528756	A0A2I4C0A7	A0A2I4CHJ2	Hairy/enhancer-of-split related with YRPW motif protein 2-like.	Neurogenic locus notch homolog protein 1-like.	0.455
LOC106527456	LOC106534674	A0A2I4CCS8	A0A2I4D3M2	Angiomotin-like 2a.	Angiomotin-like 2a.	0.902
LOC106528756	LOC106524215	A0A2I4CHJ2	A0A2I4C0A7	Neurogenic locus notch homolog protein 1-like.	Hairy/enhancer-of-split related with YRPW motif protein 2-like.	0.455
LOC106534674	LOC106527456	A0A2I4D3M2	A0A2I4CCS8	Angiomotin-like 2a.	Angiomotin-like 2a.	0.902
LOC106536703	LOC106510847	A0A2I4DB71	A0A2I4AHR9	Serum response factor-like.	Serum response factor-like.	0.902
LOC106536703	srf	A0A2I4DB71	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.904
srf	LOC106510847	A0A2I4BS82	A0A2I4AHR9	Serum response factor isoform X1.	Serum response factor-like.	0.901
srf	LOC106536703	A0A2I4BS82	A0A2I4DB71	Serum response factor isoform X1.	Serum response factor-like.	0.904