(17 nodes) Endodermal cell differentiation network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106534903	RNA polymerase-associated protein RTF1 homolog. (262 aa)
	lamb3	Laminin subunit beta-3. (1159 aa)
	LOC106535839	Nuclear receptor subfamily 0 group B member 1-like. (298 aa)
	LOC106514496	Apelin receptor B-like; Belongs to the G-protein coupled receptor 1 family. (358 aa)
	vtn	Vitronectin. (580 aa)
	hmga2	High mobility group protein HMGI-C. (115 aa)
	LOC106516706	Apelin receptor A; Belongs to the G-protein coupled receptor 1 family. (360 aa)
	LOC106517892	Matrix metalloproteinase-14-like. (611 aa)
	mmp15	Matrix metalloproteinase-15. (658 aa)
	LOC106523165	Fibronectin-like. (2512 aa)
	LOC106523459	Vitronectin-like. (431 aa)
	mixl1	Homeobox protein MIXL1 isoform X1. (333 aa)
	cdc73	Parafibromin. (530 aa)
	LOC106529465	Histone-lysine N-methyltransferase SETD2-like. (489 aa)
	rtf1	RNA polymerase-associated protein RTF1 homolog. (677 aa)
	ctr9	RNA polymerase-associated protein CTR9 homolog. (1152 aa)
	LOC106534862	Histone-lysine N-methyltransferase SETD2-like. (2210 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106514496	LOC106516706	A0A2I4AUT3	A0A2I4B4G4	Apelin receptor B-like; Belongs to the G-protein coupled receptor 1 family.	Apelin receptor A; Belongs to the G-protein coupled receptor 1 family.	0.907
LOC106516706	LOC106514496	A0A2I4B4G4	A0A2I4AUT3	Apelin receptor A; Belongs to the G-protein coupled receptor 1 family.	Apelin receptor B-like; Belongs to the G-protein coupled receptor 1 family.	0.907
LOC106523165	LOC106523459	A0A2I4BW42	A0A2I4BX92	Fibronectin-like.	Vitronectin-like.	0.512
LOC106523165	vtn	A0A2I4BW42	A0A2I4AZ38	Fibronectin-like.	Vitronectin.	0.512
LOC106523459	LOC106523165	A0A2I4BX92	A0A2I4BW42	Vitronectin-like.	Fibronectin-like.	0.512
LOC106523459	vtn	A0A2I4BX92	A0A2I4AZ38	Vitronectin-like.	Vitronectin.	0.906
LOC106529465	LOC106534862	A0A2I4CK57	A0A2I4D4A9	Histone-lysine N-methyltransferase SETD2-like.	Histone-lysine N-methyltransferase SETD2-like.	0.924
LOC106529465	LOC106534903	A0A2I4CK57	A0A2I4D4G9	Histone-lysine N-methyltransferase SETD2-like.	RNA polymerase-associated protein RTF1 homolog.	0.458
LOC106529465	cdc73	A0A2I4CK57	A0A2I4CAZ4	Histone-lysine N-methyltransferase SETD2-like.	Parafibromin.	0.529
LOC106529465	ctr9	A0A2I4CK57	A0A2I4CQX6	Histone-lysine N-methyltransferase SETD2-like.	RNA polymerase-associated protein CTR9 homolog.	0.604
LOC106529465	rtf1	A0A2I4CK57	A0A2I4CKD6	Histone-lysine N-methyltransferase SETD2-like.	RNA polymerase-associated protein RTF1 homolog.	0.458
LOC106534862	LOC106529465	A0A2I4D4A9	A0A2I4CK57	Histone-lysine N-methyltransferase SETD2-like.	Histone-lysine N-methyltransferase SETD2-like.	0.924
LOC106534862	LOC106534903	A0A2I4D4A9	A0A2I4D4G9	Histone-lysine N-methyltransferase SETD2-like.	RNA polymerase-associated protein RTF1 homolog.	0.458
LOC106534862	cdc73	A0A2I4D4A9	A0A2I4CAZ4	Histone-lysine N-methyltransferase SETD2-like.	Parafibromin.	0.529
LOC106534862	ctr9	A0A2I4D4A9	A0A2I4CQX6	Histone-lysine N-methyltransferase SETD2-like.	RNA polymerase-associated protein CTR9 homolog.	0.604
LOC106534862	rtf1	A0A2I4D4A9	A0A2I4CKD6	Histone-lysine N-methyltransferase SETD2-like.	RNA polymerase-associated protein RTF1 homolog.	0.458
LOC106534903	LOC106529465	A0A2I4D4G9	A0A2I4CK57	RNA polymerase-associated protein RTF1 homolog.	Histone-lysine N-methyltransferase SETD2-like.	0.458
LOC106534903	LOC106534862	A0A2I4D4G9	A0A2I4D4A9	RNA polymerase-associated protein RTF1 homolog.	Histone-lysine N-methyltransferase SETD2-like.	0.458
LOC106534903	cdc73	A0A2I4D4G9	A0A2I4CAZ4	RNA polymerase-associated protein RTF1 homolog.	Parafibromin.	0.963
LOC106534903	ctr9	A0A2I4D4G9	A0A2I4CQX6	RNA polymerase-associated protein RTF1 homolog.	RNA polymerase-associated protein CTR9 homolog.	0.965