14 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106526341	B2 bradykinin receptor-like; Belongs to the G-protein coupled receptor 1 family. (357 aa)
	drd1	D(1A) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (463 aa)
	vstm4	V-set and transmembrane domain-containing protein 4 isoform X1. (322 aa)
	pla2g6	85/88 kDa calcium-independent phospholipase A2. (820 aa)
	LOC106510783	V-set and transmembrane domain-containing protein 4-like isoform X1. (353 aa)
	mkks	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (563 aa)
	LOC106536877	Type-2 angiotensin II receptor-like; Belongs to the G-protein coupled receptor 1 family. (416 aa)
	npr3	Atrial natriuretic peptide receptor 3 isoform X1. (498 aa)
	adrb1	Beta-1 adrenergic receptor. (453 aa)
	LOC106520159	Beta-2 adrenergic receptor-like; Belongs to the G-protein coupled receptor 1 family. (444 aa)
	LOC106521922	Beta-2 adrenergic receptor-like. (421 aa)
	ext2	Exostosin-2; Belongs to the glycosyltransferase 47 family. (719 aa)
	ucn	Urocortin. (138 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106520159	LOC106521922	A0A2I4BIL8	A0A2I4BQX8	Beta-2 adrenergic receptor-like; Belongs to the G-protein coupled receptor 1 family.	Beta-2 adrenergic receptor-like.	0.649
LOC106520159	adrb1	A0A2I4BIL8	A0A2I4B5L6	Beta-2 adrenergic receptor-like; Belongs to the G-protein coupled receptor 1 family.	Beta-1 adrenergic receptor.	0.642
LOC106521922	LOC106520159	A0A2I4BQX8	A0A2I4BIL8	Beta-2 adrenergic receptor-like.	Beta-2 adrenergic receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.649
LOC106521922	adrb1	A0A2I4BQX8	A0A2I4B5L6	Beta-2 adrenergic receptor-like.	Beta-1 adrenergic receptor.	0.460
adrb1	LOC106520159	A0A2I4B5L6	A0A2I4BIL8	Beta-1 adrenergic receptor.	Beta-2 adrenergic receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.642
adrb1	LOC106521922	A0A2I4B5L6	A0A2I4BQX8	Beta-1 adrenergic receptor.	Beta-2 adrenergic receptor-like.	0.460