(16 nodes) Stress fiber assembly network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106514144	FH2 domain-containing protein 1-like. (810 aa)
	LOC106515394	Elastin-like. (1030 aa)
	LOC106515958	Inverted formin-2-like. (1073 aa)
	fhdc1	FH2 domain-containing protein 1. (1168 aa)
	LOC106520478	Zyxin-like. (607 aa)
	fam171a2	Protein FAM171A2. (828 aa)
	srf	Serum response factor isoform X1. (485 aa)
	fam171a1	Protein FAM171A1 isoform X1. (894 aa)
	cul3	Cullin-3; Belongs to the cullin family. (767 aa)
	LOC106527576	FH2 domain-containing protein 1-like. (1118 aa)
	LOC106528145	Cullin-3-like; Belongs to the cullin family. (766 aa)
	phactr1	Phosphatase and actin regulator. (585 aa)
	LOC106535297	FH2 domain-containing protein 1-like. (827 aa)
	LOC106533925	Phosphatase and actin regulator. (596 aa)
	LOC106536703	Serum response factor-like. (519 aa)
	LOC106510847	Serum response factor-like. (385 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510847	LOC106536703	A0A2I4AHR9	A0A2I4DB71	Serum response factor-like.	Serum response factor-like.	0.902
LOC106510847	srf	A0A2I4AHR9	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.901
LOC106528145	cul3	A0A2I4CFB7	A0A2I4C0V8	Cullin-3-like; Belongs to the cullin family.	Cullin-3; Belongs to the cullin family.	0.900
LOC106536703	LOC106510847	A0A2I4DB71	A0A2I4AHR9	Serum response factor-like.	Serum response factor-like.	0.902
LOC106536703	srf	A0A2I4DB71	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.904
cul3	LOC106528145	A0A2I4C0V8	A0A2I4CFB7	Cullin-3; Belongs to the cullin family.	Cullin-3-like; Belongs to the cullin family.	0.900
srf	LOC106510847	A0A2I4BS82	A0A2I4AHR9	Serum response factor isoform X1.	Serum response factor-like.	0.901
srf	LOC106536703	A0A2I4BS82	A0A2I4DB71	Serum response factor isoform X1.	Serum response factor-like.	0.904