(26 nodes) Sarcomere organization network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106516637	Synaptopodin 2-like protein. (1161 aa)
	LOC106515374	Myozenin-1-like. (318 aa)
	myoz2	Myozenin-2. (267 aa)
	orai1	Calcium release-activated calcium channel protein 1. (223 aa)
	klhl41	Kelch-like protein 41 isoform X1. (619 aa)
	LOC106510847	Serum response factor-like. (385 aa)
	LOC106525551	Troponin T, cardiac muscle isoforms-like. (265 aa)
	LOC106525199	Troponin T, fast skeletal muscle isoforms-like isoform X1. (309 aa)
	csrp3	Cysteine and glycine-rich protein 3. (193 aa)
	csrp1	Cysteine and glycine-rich protein 1. (191 aa)
	LOC106524239	Troponin T, cardiac muscle-like isoform X1. (288 aa)
	wdr1	WD repeat-containing protein 1. (606 aa)
	csrp2	Cysteine and glycine-rich protein 2. (193 aa)
	srf	Serum response factor isoform X1. (485 aa)
	lrrc39	Leucine-rich repeat-containing protein 39. (346 aa)
	LOC106519185	Kelch-like protein 41b. (608 aa)
	LOC106525824	LIM domain-binding protein 3-like isoform X2. (592 aa)
	LOC106526786	Troponin T, slow skeletal muscle-like. (218 aa)
	tcap	Telethonin. (179 aa)
	LOC106529871	Troponin T, fast skeletal muscle isoforms-like. (328 aa)
	LOC106534108	Troponin T, cardiac muscle isoforms-like. (239 aa)
	LOC106518299	Cysteine and glycine-rich protein 1-like isoform X1. (199 aa)
	LOC106536703	Serum response factor-like. (519 aa)
	LOC106518297	Troponin T, cardiac muscle isoforms-like. (242 aa)
	tnnt1	Troponin T, slow skeletal muscle isoform X1. (264 aa)
	LOC106517180	Myozenin-2-like. (211 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510847	LOC106536703	A0A2I4AHR9	A0A2I4DB71	Serum response factor-like.	Serum response factor-like.	0.902
LOC106510847	srf	A0A2I4AHR9	A0A2I4BS82	Serum response factor-like.	Serum response factor isoform X1.	0.901
LOC106515374	LOC106518297	A0A2I4AYP1	A0A2I4BB33	Myozenin-1-like.	Troponin T, cardiac muscle isoforms-like.	0.461
LOC106515374	LOC106524239	A0A2I4AYP1	A0A2I4C098	Myozenin-1-like.	Troponin T, cardiac muscle-like isoform X1.	0.461
LOC106515374	LOC106525199	A0A2I4AYP1	A0A2I4C478	Myozenin-1-like.	Troponin T, fast skeletal muscle isoforms-like isoform X1.	0.461
LOC106515374	LOC106525551	A0A2I4AYP1	A0A2I4C5N6	Myozenin-1-like.	Troponin T, cardiac muscle isoforms-like.	0.461
LOC106515374	LOC106526786	A0A2I4AYP1	A0A2I4CAB2	Myozenin-1-like.	Troponin T, slow skeletal muscle-like.	0.461
LOC106515374	LOC106529871	A0A2I4AYP1	A0A2I4CLI7	Myozenin-1-like.	Troponin T, fast skeletal muscle isoforms-like.	0.461
LOC106515374	LOC106534108	A0A2I4AYP1	A0A2I4D1I5	Myozenin-1-like.	Troponin T, cardiac muscle isoforms-like.	0.461
LOC106515374	csrp3	A0A2I4AYP1	A0A2I4C263	Myozenin-1-like.	Cysteine and glycine-rich protein 3.	0.436
LOC106515374	tcap	A0A2I4AYP1	A0A2I4CBN5	Myozenin-1-like.	Telethonin.	0.754
LOC106515374	tnnt1	A0A2I4AYP1	A0A2I4B7L8	Myozenin-1-like.	Troponin T, slow skeletal muscle isoform X1.	0.461
LOC106517180	LOC106525824	A0A2I4B6J3	A0A2I4C6J9	Myozenin-2-like.	LIM domain-binding protein 3-like isoform X2.	0.466
LOC106517180	csrp3	A0A2I4B6J3	A0A2I4C263	Myozenin-2-like.	Cysteine and glycine-rich protein 3.	0.731
LOC106517180	tcap	A0A2I4B6J3	A0A2I4CBN5	Myozenin-2-like.	Telethonin.	0.592
LOC106518297	LOC106515374	A0A2I4BB33	A0A2I4AYP1	Troponin T, cardiac muscle isoforms-like.	Myozenin-1-like.	0.461
LOC106518297	LOC106525199	A0A2I4BB33	A0A2I4C478	Troponin T, cardiac muscle isoforms-like.	Troponin T, fast skeletal muscle isoforms-like isoform X1.	0.451
LOC106518297	LOC106526786	A0A2I4BB33	A0A2I4CAB2	Troponin T, cardiac muscle isoforms-like.	Troponin T, slow skeletal muscle-like.	0.437
LOC106518297	LOC106529871	A0A2I4BB33	A0A2I4CLI7	Troponin T, cardiac muscle isoforms-like.	Troponin T, fast skeletal muscle isoforms-like.	0.453
LOC106518297	csrp3	A0A2I4BB33	A0A2I4C263	Troponin T, cardiac muscle isoforms-like.	Cysteine and glycine-rich protein 3.	0.401