STRINGSTRING
ptch1 ptch1 LOC106533856 LOC106533856 rock1 rock1 LOC106532975 LOC106532975 LOC106527385 LOC106527385 grhl1 grhl1 mafg mafg LOC106519260 LOC106519260 llgl2 llgl2 rock2 rock2 LOC106518158 LOC106518158 LOC106518122 LOC106518122 numa1 numa1 med1 med1 errfi1 errfi1 LOC106513751 LOC106513751 LOC106513284 LOC106513284 LOC106513041 LOC106513041 LOC106512204 LOC106512204 LOC106510960 LOC106510960 LOC106536344 LOC106536344 LOC106535843 LOC106535843 kdf1 kdf1 etv4 etv4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ptch1Protein patched homolog 1. (1554 aa)
LOC106533856Transcription factor MafG isoform X1. (222 aa)
rock1Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. (1379 aa)
LOC106532975Krueppel-like factor 7. (306 aa)
LOC106527385Core histone macro-H2A.1; Belongs to the histone H2A family. (369 aa)
grhl1LOW QUALITY PROTEIN: grainyhead-like protein 1 homolog isoform X1. (617 aa)
mafgTranscription factor MafG. (172 aa)
LOC106519260Grainyhead-like protein 2 homolog isoform X1. (632 aa)
llgl2Lethal(2) giant larvae protein homolog 2. (1010 aa)
rock2Rho-associated protein kinase 2 isoform X1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1430 aa)
LOC106518158Grainyhead-like protein 2 homolog. (599 aa)
LOC106518122Transmembrane protein 79-like. (425 aa)
numa1Nuclear mitotic apparatus protein 1 isoform X1. (1091 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1785 aa)
errfi1ERBB receptor feedback inhibitor 1. (426 aa)
LOC106513751Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (370 aa)
LOC106513284NGFI-A-binding protein 2-like. (505 aa)
LOC106513041ERBB receptor feedback inhibitor 1-like. (377 aa)
LOC106512204Grainyhead-like protein 2 homolog. (212 aa)
LOC106510960Nuclear mitotic apparatus protein 1-like. (669 aa)
LOC106536344Krueppel-like factor 7. (299 aa)
LOC106535843LOW QUALITY PROTEIN: keratinocyte differentiation factor 1-like. (347 aa)
kdf1Keratinocyte differentiation factor 1. (388 aa)
etv4ETS translocation variant 4. (486 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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