(11 nodes) mRNA 5-UTR binding network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106527434	Fragile X mental retardation protein 1 homolog. (414 aa)
	shmt1	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (482 aa)
	dhx36	ATP-dependent RNA helicase DHX36. (1071 aa)
	LOC106515133	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (537 aa)
	cct5	T-complex protein 1 subunit epsilon. (541 aa)
	LOC106536297	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (504 aa)
	rsl1d1	Ribosomal L1 domain-containing protein 1. (282 aa)
	utp23	rRNA-processing protein UTP23 homolog. (252 aa)
	larp6	La-related protein 6. (705 aa)
	mrps11	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family. (196 aa)
	LOC106536374	Fragile X mental retardation protein 1 homolog B-like. (621 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106515133	LOC106536297	A0A2I4AXM8	A0A2I4D9P5	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
LOC106515133	shmt1	A0A2I4AXM8	A0A2I4BKR6	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
LOC106536297	LOC106515133	A0A2I4D9P5	A0A2I4AXM8	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
LOC106536297	shmt1	A0A2I4D9P5	A0A2I4BKR6	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
dhx36	mrps11	A0A2I4BFP4	A0A2I4BTD7	ATP-dependent RNA helicase DHX36.	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	0.422
mrps11	dhx36	A0A2I4BTD7	A0A2I4BFP4	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	ATP-dependent RNA helicase DHX36.	0.422
mrps11	rsl1d1	A0A2I4BTD7	A0A2I4CUT9	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	Ribosomal L1 domain-containing protein 1.	0.599
rsl1d1	mrps11	A0A2I4CUT9	A0A2I4BTD7	Ribosomal L1 domain-containing protein 1.	28S ribosomal protein S11, mitochondrial; Belongs to the universal ribosomal protein uS11 family.	0.599
rsl1d1	utp23	A0A2I4CUT9	A0A2I4CPH9	Ribosomal L1 domain-containing protein 1.	rRNA-processing protein UTP23 homolog.	0.747
shmt1	LOC106515133	A0A2I4BKR6	A0A2I4AXM8	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
shmt1	LOC106536297	A0A2I4BKR6	A0A2I4D9P5	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.901
utp23	rsl1d1	A0A2I4CPH9	A0A2I4CUT9	rRNA-processing protein UTP23 homolog.	Ribosomal L1 domain-containing protein 1.	0.747