(10 nodes) COPII vesicle coating network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pef1	Peflin isoform X1. (260 aa)
	pdcd6	Programmed cell death protein 6. (185 aa)
	preb	Prolactin regulatory element-binding protein isoform X1. (430 aa)
	tfg	Protein TFG isoform X1. (410 aa)
	LOC106511817	Kelch-like protein 23. (538 aa)
	sec16a	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (2352 aa)
	klhl12	Kelch-like protein 12. (613 aa)
	cul3	Cullin-3; Belongs to the cullin family. (767 aa)
	LOC106528145	Cullin-3-like; Belongs to the cullin family. (766 aa)
	sec16b	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (926 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106511817	LOC106528145	A0A2I4AKJ2	A0A2I4CFB7	Kelch-like protein 23.	Cullin-3-like; Belongs to the cullin family.	0.770
LOC106511817	cul3	A0A2I4AKJ2	A0A2I4C0V8	Kelch-like protein 23.	Cullin-3; Belongs to the cullin family.	0.770
LOC106511817	pef1	A0A2I4AKJ2	A0A2I4CI05	Kelch-like protein 23.	Peflin isoform X1.	0.483
LOC106528145	LOC106511817	A0A2I4CFB7	A0A2I4AKJ2	Cullin-3-like; Belongs to the cullin family.	Kelch-like protein 23.	0.770
LOC106528145	cul3	A0A2I4CFB7	A0A2I4C0V8	Cullin-3-like; Belongs to the cullin family.	Cullin-3; Belongs to the cullin family.	0.900
LOC106528145	klhl12	A0A2I4CFB7	A0A2I4BVC3	Cullin-3-like; Belongs to the cullin family.	Kelch-like protein 12.	0.770
cul3	LOC106511817	A0A2I4C0V8	A0A2I4AKJ2	Cullin-3; Belongs to the cullin family.	Kelch-like protein 23.	0.770
cul3	LOC106528145	A0A2I4C0V8	A0A2I4CFB7	Cullin-3; Belongs to the cullin family.	Cullin-3-like; Belongs to the cullin family.	0.900
cul3	klhl12	A0A2I4C0V8	A0A2I4BVC3	Cullin-3; Belongs to the cullin family.	Kelch-like protein 12.	0.817
klhl12	LOC106528145	A0A2I4BVC3	A0A2I4CFB7	Kelch-like protein 12.	Cullin-3-like; Belongs to the cullin family.	0.770
klhl12	cul3	A0A2I4BVC3	A0A2I4C0V8	Kelch-like protein 12.	Cullin-3; Belongs to the cullin family.	0.817
klhl12	pef1	A0A2I4BVC3	A0A2I4CI05	Kelch-like protein 12.	Peflin isoform X1.	0.650
pef1	LOC106511817	A0A2I4CI05	A0A2I4AKJ2	Peflin isoform X1.	Kelch-like protein 23.	0.483
pef1	klhl12	A0A2I4CI05	A0A2I4BVC3	Peflin isoform X1.	Kelch-like protein 12.	0.650
preb	sec16a	A0A2I4CP91	A0A2I4B2N2	Prolactin regulatory element-binding protein isoform X1.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.645
preb	sec16b	A0A2I4CP91	A0A2I4CHQ7	Prolactin regulatory element-binding protein isoform X1.	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	0.645
preb	tfg	A0A2I4CP91	A0A2I4D2B2	Prolactin regulatory element-binding protein isoform X1.	Protein TFG isoform X1.	0.471
sec16a	preb	A0A2I4B2N2	A0A2I4CP91	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Prolactin regulatory element-binding protein isoform X1.	0.645
sec16a	tfg	A0A2I4B2N2	A0A2I4D2B2	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Protein TFG isoform X1.	0.779
sec16b	preb	A0A2I4CHQ7	A0A2I4CP91	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.	Prolactin regulatory element-binding protein isoform X1.	0.645