STRINGSTRING
ppid ppid LOC106515429 LOC106515429 tsg101 tsg101 adar adar top2a top2a tbc1d20 tbc1d20 LOC106518139 LOC106518139 LOC106518176 LOC106518176 ppie ppie atg12 atg12 LOC106521019 LOC106521019 vps37b vps37b ddb1 ddb1 rsf1 rsf1 dhx9 dhx9 fkbp6 fkbp6 LOC106536388 LOC106536388 atg5 atg5 LOC106526321 LOC106526321 LOC106522480 LOC106522480 LOC106526310 LOC106526310 top2b top2b pde12 pde12 LOC106510884 LOC106510884
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ppidPeptidyl-prolyl cis-trans isomerase D. (370 aa)
LOC106515429Transmembrane protease serine 4-like isoform X1; Belongs to the peptidase S1 family. (485 aa)
tsg101Tumor susceptibility gene 101 protein. (390 aa)
adarDouble-stranded RNA-specific adenosine deaminase isoform X1. (1335 aa)
top2aDNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1571 aa)
tbc1d20TBC1 domain family member 20. (397 aa)
LOC106518139TBC1 domain family member 20-like isoform X1. (412 aa)
LOC106518176Protein C9orf69 homolog. (168 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
LOC106521019T-cell surface glycoprotein CD4-like. (434 aa)
vps37bVacuolar protein sorting-associated protein 37B. (283 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
rsf1Remodeling and spacing factor 1. (1384 aa)
dhx9ATP-dependent RNA helicase A. (1264 aa)
fkbp6Peptidylprolyl isomerase. (329 aa)
LOC106536388DNA topoisomerase 2-beta-like. (950 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
LOC106526321Galectin. (132 aa)
LOC106522480Galectin. (127 aa)
LOC106526310Galectin. (139 aa)
top2bDNA topoisomerase 2-beta. (2140 aa)
pde122',5'-phosphodiesterase 12. (591 aa)
LOC106510884Remodeling and spacing factor 1-like. (1601 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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