STRINGSTRING
prpf19 prpf19 LOC106511089 LOC106511089 LOC106511069 LOC106511069 LOC106511099 LOC106511099 eif4a3 eif4a3 LOC106511350 LOC106511350 LOC106511536 LOC106511536 LOC106511762 LOC106511762 LOC106511728 LOC106511728 LOC106511761 LOC106511761 LOC106511756 LOC106511756 LOC106511911 LOC106511911 LOC106512413 LOC106512413 LOC106512422 LOC106512422 cpeb1 cpeb1 ybx1 ybx1 LOC106513329 LOC106513329 LOC106513542 LOC106513542 LOC106513932 LOC106513932 larp7 larp7 acin1 acin1 celf5 celf5 LOC106515087 LOC106515087 rbmx rbmx mettl16 mettl16 LOC106515813 LOC106515813 rbm5 rbm5 LOC106516102 LOC106516102 LOC106516137 LOC106516137 ptcd2 ptcd2 LOC106516672 LOC106516672 dazap1 dazap1 smu1 smu1 LOC106517771 LOC106517771 LOC106517891 LOC106517891 zc3h10 zc3h10 LOC106518464 LOC106518464 wtap wtap LOC106518653 LOC106518653 ddx5 ddx5 rbfox3 rbfox3 LOC106519024 LOC106519024 LOC106519034 LOC106519034 sap18 sap18 dhx36 dhx36 srrm4 srrm4 khdrbs2 khdrbs2 LOC106519715 LOC106519715 fam172a fam172a LOC106520459 LOC106520459 u2af2 u2af2 LOC106520532 LOC106520532 LOC106520611 LOC106520611 rbm20 rbm20 LOC106521499 LOC106521499 LOC106521564 LOC106521564 raver2 raver2 cpsf6 cpsf6 rbm7 rbm7 ncmap ncmap rbm25 rbm25 kiaa1429 kiaa1429 rbm39 rbm39 tra2b tra2b nsrp1 nsrp1 celf4 celf4 LOC106523876 LOC106523876 LOC106523880 LOC106523880 LOC106524046 LOC106524046 LOC106525180 LOC106525180 LOC106525284 LOC106525284 snw1 snw1 srpk1 srpk1 LOC106525578 LOC106525578 rbm15 rbm15 LOC106525732 LOC106525732 LOC106526430 LOC106526430 cdc73 cdc73 LOC106527434 LOC106527434 LOC106527718 LOC106527718 celf2 celf2 fxr2 fxr2 rbm8a rbm8a LOC106528523 LOC106528523 LOC106528619 LOC106528619 raver1 raver1 magoh magoh khdrbs1 khdrbs1 cpsf7 cpsf7 rbm15b rbm15b LOC106531342 LOC106531342 LOC106531362 LOC106531362 LOC106531515 LOC106531515 LOC106531534 LOC106531534 dhx9 dhx9 sltm sltm nudt21 nudt21 LOC106532104 LOC106532104 LOC106532103 LOC106532103 LOC106533314 LOC106533314 LOC106533553 LOC106533553 LOC106533706 LOC106533706 jmjd6 jmjd6 rest rest LOC106534231 LOC106534231 LOC106534513 LOC106534513 LOC106534529 LOC106534529 sf3b4 sf3b4 puf60 puf60 LOC106534985 LOC106534985 LOC106535005 LOC106535005 LOC106535085 LOC106535085 srrm1 srrm1 LOC106535497 LOC106535497 zc3h3 zc3h3 LOC106535606 LOC106535606 LOC106535883 LOC106535883 snrpc snrpc LOC106535998 LOC106535998 LOC106536019 LOC106536019 LOC106536142 LOC106536142 LOC106536374 LOC106536374 LOC106536497 LOC106536497 LOC106536970 LOC106536970 LOC106536963 LOC106536963 c1qbp c1qbp cirbp cirbp
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf19pre-mRNA-processing factor 19. (505 aa)
LOC106511089Splicing factor 1-like. (677 aa)
LOC106511069Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (618 aa)
LOC106511099Apoptotic chromatin condensation inducer in the nucleus-like. (641 aa)
eif4a3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (406 aa)
LOC106511350Nuclear pore complex protein Nup98-Nup96-like. (951 aa)
LOC106511536YTH domain-containing protein 1-like. (472 aa)
LOC106511762Nuclear pore complex protein Nup98-Nup96-like. (208 aa)
LOC106511728poly(U)-binding-splicing factor PUF60-like. (531 aa)
LOC106511761Nuclear pore complex protein Nup98-Nup96-like. (318 aa)
LOC106511756Nuclear pore complex protein Nup98-Nup96-like. (212 aa)
LOC106511911Zinc finger CCCH domain-containing protein 3-like. (168 aa)
LOC106512413La-related protein 7-like. (305 aa)
LOC106512422RNA-binding protein 25-like. (235 aa)
cpeb1Cytoplasmic polyadenylation element-binding protein 1 isoform X1. (581 aa)
ybx1Nuclease-sensitive element-binding protein 1 isoform X1. (324 aa)
LOC106513329SRSF protein kinase 3-like isoform X1. (707 aa)
LOC106513542Splicing factor, suppressor of white-apricot homolog. (950 aa)
LOC106513932Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (527 aa)
larp7La-related protein 7. (549 aa)
acin1Apoptotic chromatin condensation inducer in the nucleus. (2055 aa)
celf5CUGBP Elav-like family member 5 isoform X1. (528 aa)
LOC106515087CUGBP Elav-like family member 3 isoform X1. (483 aa)
rbmxRNA-binding motif protein, X chromosome. (386 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (545 aa)
LOC106515813RNA-binding protein 24. (232 aa)
rbm5RNA-binding protein 5 isoform X1. (855 aa)
LOC106516102Serine/arginine-rich splicing factor 3-like. (168 aa)
LOC106516137Serine/arginine-rich splicing factor 3. (165 aa)
ptcd2Pentatricopeptide repeat-containing protein 2, mitochondrial. (388 aa)
LOC106516672Protein quaking-B-like isoform X1. (348 aa)
dazap1DAZ-associated protein 1 isoform X4. (435 aa)
smu1WD40 repeat-containing protein SMU1. (511 aa)
LOC106517771RNA-binding protein 24-like. (120 aa)
LOC106517891Apoptotic chromatin condensation inducer in the nucleus-like. (1036 aa)
zc3h10Zinc finger CCCH domain-containing protein 10. (550 aa)
LOC106518464Transformer-2 protein homolog alpha-like. (292 aa)
wtappre-mRNA-splicing regulator WTAP. (420 aa)
LOC106518653Cleavage and polyadenylation specificity factor subunit 6-like isoform X1. (223 aa)
ddx5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (631 aa)
rbfox3RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (396 aa)
LOC106519024Protein quaking-B-like isoform X1. (324 aa)
LOC106519034RNA-binding protein 38-like. (250 aa)
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)
dhx36ATP-dependent RNA helicase DHX36. (1071 aa)
srrm4Serine/arginine repetitive matrix protein 4 isoform X1. (596 aa)
khdrbs2KH domain-containing, RNA-binding, signal transduction-associated protein 2. (342 aa)
LOC106519715KH domain-containing, RNA-binding, signal transduction-associated protein 1-like. (373 aa)
fam172aProtein FAM172A isoform X1. (422 aa)
LOC106520459Protein quaking-A isoform X1. (395 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (476 aa)
LOC106520532RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (385 aa)
LOC106520611Zinc finger CCCH domain-containing protein 14-like isoform X1. (676 aa)
rbm20RNA-binding protein 20. (1085 aa)
LOC106521499KH domain-containing, RNA-binding, signal transduction-associated protein 3-like. (199 aa)
LOC106521564Scaffold attachment factor B2-like. (795 aa)
raver2Ribonucleoprotein PTB-binding 2. (885 aa)
cpsf6Cleavage and polyadenylation specificity factor subunit 6 isoform X1. (585 aa)
rbm7RNA-binding protein 7. (249 aa)
ncmapNoncompact myelin-associated protein. (145 aa)
rbm25RNA-binding protein 25 isoform X2. (812 aa)
kiaa1429Protein virilizer homolog isoform X1. (1812 aa)
rbm39RNA-binding protein 39. (499 aa)
tra2bTransformer-2 protein homolog beta. (297 aa)
nsrp1Nuclear speckle splicing regulatory protein 1. (458 aa)
celf4CUGBP Elav-like family member 4 isoform X1. (266 aa)
LOC106523876Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (618 aa)
LOC106523880RNA binding protein fox-1 homolog 2-like. (454 aa)
LOC106524046RNA-binding protein 10-like isoform X1. (929 aa)
LOC106525180RNA-binding protein 38-like. (244 aa)
LOC106525284Zinc finger CCCH domain-containing protein 14-like. (675 aa)
snw1SNW domain-containing protein 1 isoform X1. (537 aa)
srpk1SRSF protein kinase 1 isoform X1. (643 aa)
LOC106525578SRSF protein kinase 3-like; Belongs to the protein kinase superfamily. (409 aa)
rbm15Putative RNA-binding protein 15. (846 aa)
LOC106525732RNA-binding protein 39-like. (503 aa)
LOC106526430Apoptotic chromatin condensation inducer in the nucleus-like. (779 aa)
cdc73Parafibromin. (530 aa)
LOC106527434Fragile X mental retardation protein 1 homolog. (414 aa)
LOC106527718LOW QUALITY PROTEIN: SRSF protein kinase 3-like. (619 aa)
celf2CUGBP Elav-like family member 2 isoform X1. (543 aa)
fxr2Fragile X mental retardation syndrome-related protein 2 isoform X1. (678 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (186 aa)
LOC106528523RNA-binding protein Nova-1-like. (366 aa)
LOC106528619Nucleolin-like. (428 aa)
raver1Ribonucleoprotein PTB-binding 1 isoform X1. (749 aa)
magohProtein mago nashi homolog. (147 aa)
khdrbs1KH domain-containing, RNA-binding, signal transduction-associated protein 1. (361 aa)
cpsf7Cleavage and polyadenylation specificity factor subunit 7. (474 aa)
rbm15bPutative RNA-binding protein 15B. (833 aa)
LOC106531342CUGBP Elav-like family member 1. (468 aa)
LOC106531362Splicing factor 1-like. (547 aa)
LOC106531515KH domain-containing, RNA-binding, signal transduction-associated protein 3-like. (336 aa)
LOC106531534Fragile X mental retardation syndrome-related protein 1 homolog B-like isoform X1. (1188 aa)
dhx9ATP-dependent RNA helicase A. (1264 aa)
sltmSAFB-like transcription modulator isoform X1. (978 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (234 aa)
LOC106532104Nuclear pore complex protein Nup98-Nup96-like. (90 aa)
LOC106532103Nuclear pore complex protein Nup98-Nup96-like. (1631 aa)
LOC106533314RNA-binding protein 25-like. (837 aa)
LOC106533553RNA binding protein fox-1 homolog 2-like isoform X1. (513 aa)
LOC106533706WD40 repeat-containing protein SMU1. (513 aa)
jmjd6Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6. (403 aa)
restRE1-silencing transcription factor. (867 aa)
LOC106534231poly(U)-binding-splicing factor PUF60-like. (321 aa)
LOC106534513Protein SON-like. (1005 aa)
LOC106534529SRSF protein kinase 3-like. (645 aa)
sf3b4Splicing factor 3B subunit 4. (385 aa)
puf60poly(U)-binding-splicing factor PUF60. (550 aa)
LOC106534985CUGBP Elav-like family member 4. (484 aa)
LOC106535005CUGBP Elav-like family member 3-B isoform X1. (492 aa)
LOC106535085RNA-binding protein Nova-1-like. (519 aa)
srrm1Serine/arginine repetitive matrix protein 1 isoform X1. (832 aa)
LOC106535497RNA-binding protein 6-like isoform X1. (1294 aa)
zc3h3Zinc finger CCCH domain-containing protein 3. (857 aa)
LOC106535606Probable ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (646 aa)
LOC106535883YTH domain-containing protein 1-like. (667 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
LOC106535998Apoptotic chromatin condensation inducer in the nucleus-like. (837 aa)
LOC106536019CUGBP Elav-like family member 3. (458 aa)
LOC106536142Protein IWS1 homolog. (805 aa)
LOC106536374Fragile X mental retardation protein 1 homolog B-like. (621 aa)
LOC106536497CUGBP Elav-like family member 2 isoform X1. (530 aa)
LOC106536970Serine/arginine-rich splicing factor 9-like. (248 aa)
LOC106536963Serine/arginine-rich splicing factor 7-like. (197 aa)
c1qbpComplement component 1 Q subcomponent-binding protein, mitochondrial. (292 aa)
cirbpCold-inducible RNA-binding protein. (180 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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