(8 nodes) Radial glial cell differentiation network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mettl3	N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family. (586 aa)
	metrn	Meteorin. (305 aa)
	gpr157	Probable G-protein coupled receptor 157. (332 aa)
	LOC106528756	Neurogenic locus notch homolog protein 1-like. (2518 aa)
	LOC106531909	Meteorin-like protein. (296 aa)
	LOC106516268	Neurogenic locus notch homolog protein 1-like. (2471 aa)
	lef1	Lymphoid enhancer-binding factor 1 isoform X1. (380 aa)
	mettl14	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family. (455 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106516268	lef1	A0A2I4B2P1	A0A2I4B647	Neurogenic locus notch homolog protein 1-like.	Lymphoid enhancer-binding factor 1 isoform X1.	0.488
LOC106528756	lef1	A0A2I4CHJ2	A0A2I4B647	Neurogenic locus notch homolog protein 1-like.	Lymphoid enhancer-binding factor 1 isoform X1.	0.488
lef1	LOC106516268	A0A2I4B647	A0A2I4B2P1	Lymphoid enhancer-binding factor 1 isoform X1.	Neurogenic locus notch homolog protein 1-like.	0.488
lef1	LOC106528756	A0A2I4B647	A0A2I4CHJ2	Lymphoid enhancer-binding factor 1 isoform X1.	Neurogenic locus notch homolog protein 1-like.	0.488
mettl14	mettl3	A0A2I4B6F0	A0A2I4CYH5	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.	0.998
mettl3	mettl14	A0A2I4CYH5	A0A2I4B6F0	N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.	N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	0.998