(12 nodes) Protein-lipid complex assembly network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106523750	Apolipoprotein Eb-like. (265 aa)
	LOC106527102	O-acyltransferase. (513 aa)
	LOC106516939	Sorting nexin. (622 aa)
	soat2	O-acyltransferase. (529 aa)
	LOC106512752	Diacylglycerol O-acyltransferase 1-like. (133 aa)
	soat1	O-acyltransferase. (563 aa)
	apoe	Apolipoprotein E. (251 aa)
	mttp	Microsomal triglyceride transfer protein large subunit. (886 aa)
	apom	Apolipoprotein M isoform X1. (191 aa)
	LOC106517611	Sorting nexin-9-like isoform X1. (529 aa)
	dgat1	O-acyltransferase. (521 aa)
	lpcat3	Lysophospholipid acyltransferase 5 isoform X1; Belongs to the membrane-bound acyltransferase family. (465 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106523750	mttp	A0A2I4BYB0	A0A2I4B6H9	Apolipoprotein Eb-like.	Microsomal triglyceride transfer protein large subunit.	0.428
LOC106527102	dgat1	A0A2I4CBG1	A0A2I4BAH7	O-acyltransferase.	O-acyltransferase.	0.901
apoe	mttp	A0A2I4CMA5	A0A2I4B6H9	Apolipoprotein E.	Microsomal triglyceride transfer protein large subunit.	0.440
dgat1	LOC106527102	A0A2I4BAH7	A0A2I4CBG1	O-acyltransferase.	O-acyltransferase.	0.901
mttp	LOC106523750	A0A2I4B6H9	A0A2I4BYB0	Microsomal triglyceride transfer protein large subunit.	Apolipoprotein Eb-like.	0.428
mttp	apoe	A0A2I4B6H9	A0A2I4CMA5	Microsomal triglyceride transfer protein large subunit.	Apolipoprotein E.	0.440
soat1	soat2	A0A2I4ALD1	A0A2I4AVT4	O-acyltransferase.	O-acyltransferase.	0.903
soat2	soat1	A0A2I4AVT4	A0A2I4ALD1	O-acyltransferase.	O-acyltransferase.	0.903