(24 nodes) Lysine-acetylated histone binding network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	carm1	Histone-arginine methyltransferase CARM1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (581 aa)
	psme4	Proteasome activator complex subunit 4 isoform X1. (1849 aa)
	brd9	Bromodomain-containing protein 9 isoform X1. (671 aa)
	LOC106524077	Protein kinase C-binding protein 1-like isoform X1. (1171 aa)
	LOC106523377	Rieske domain-containing protein-like. (131 aa)
	LOC106523079	Bromodomain-containing protein 2-like. (832 aa)
	kiaa2026	Uncharacterized protein KIAA2026 homolog. (2298 aa)
	LOC106522696	Bromodomain-containing protein 4-like. (1433 aa)
	yeats4	YEATS domain-containing protein 4. (226 aa)
	zzz3	ZZ-type zinc finger-containing protein 3 isoform X1. (1019 aa)
	brd2	Bromodomain-containing protein 2. (822 aa)
	LOC106519037	Protein kinase C-binding protein 1-like isoform X1. (1159 aa)
	brd3	Bromodomain-containing protein 3. (500 aa)
	brwd3	Bromodomain and WD repeat-containing protein 3. (1773 aa)
	LOC106516614	Proteasome activator complex subunit 4B-like. (1810 aa)
	LOC106533600	Nucleolin 2-like. (434 aa)
	phip	PH-interacting protein. (1836 aa)
	LOC106533598	Bromodomain and WD repeat-containing protein 1-like. (1120 aa)
	LOC106530954	PH-interacting protein-like isoform X1. (521 aa)
	LOC106529631	Bromodomain-containing protein 3-like isoform X2. (995 aa)
	LOC106529285	Bromodomain-containing protein 4-like isoform X1. (1520 aa)
	zzef1	Zinc finger ZZ-type and EF-hand domain-containing protein 1 isoform X1. (3014 aa)
	LOC106527830	Bromodomain-containing protein 3-like. (670 aa)
	brd7	Bromodomain-containing protein 7. (619 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106516614	psme4	A0A2I4B461	A0A2I4B8K9	Proteasome activator complex subunit 4B-like.	Proteasome activator complex subunit 4 isoform X1.	0.901
LOC106522696	yeats4	A0A2I4BU43	A0A2I4BQF8	Bromodomain-containing protein 4-like.	YEATS domain-containing protein 4.	0.471
LOC106523079	yeats4	A0A2I4BVS6	A0A2I4BQF8	Bromodomain-containing protein 2-like.	YEATS domain-containing protein 4.	0.471
LOC106527830	yeats4	A0A2I4CE73	A0A2I4BQF8	Bromodomain-containing protein 3-like.	YEATS domain-containing protein 4.	0.471
LOC106529285	yeats4	A0A2I4CJE4	A0A2I4BQF8	Bromodomain-containing protein 4-like isoform X1.	YEATS domain-containing protein 4.	0.471
LOC106529631	yeats4	A0A2I4CKP3	A0A2I4BQF8	Bromodomain-containing protein 3-like isoform X2.	YEATS domain-containing protein 4.	0.471
brd2	yeats4	A0A2I4BG77	A0A2I4BQF8	Bromodomain-containing protein 2.	YEATS domain-containing protein 4.	0.471
brd3	yeats4	A0A2I4AR14	A0A2I4BQF8	Bromodomain-containing protein 3.	YEATS domain-containing protein 4.	0.471
psme4	LOC106516614	A0A2I4B8K9	A0A2I4B461	Proteasome activator complex subunit 4 isoform X1.	Proteasome activator complex subunit 4B-like.	0.901
yeats4	LOC106522696	A0A2I4BQF8	A0A2I4BU43	YEATS domain-containing protein 4.	Bromodomain-containing protein 4-like.	0.471
yeats4	LOC106523079	A0A2I4BQF8	A0A2I4BVS6	YEATS domain-containing protein 4.	Bromodomain-containing protein 2-like.	0.471
yeats4	LOC106527830	A0A2I4BQF8	A0A2I4CE73	YEATS domain-containing protein 4.	Bromodomain-containing protein 3-like.	0.471
yeats4	LOC106529285	A0A2I4BQF8	A0A2I4CJE4	YEATS domain-containing protein 4.	Bromodomain-containing protein 4-like isoform X1.	0.471
yeats4	LOC106529631	A0A2I4BQF8	A0A2I4CKP3	YEATS domain-containing protein 4.	Bromodomain-containing protein 3-like isoform X2.	0.471
yeats4	brd2	A0A2I4BQF8	A0A2I4BG77	YEATS domain-containing protein 4.	Bromodomain-containing protein 2.	0.471
yeats4	brd3	A0A2I4BQF8	A0A2I4AR14	YEATS domain-containing protein 4.	Bromodomain-containing protein 3.	0.471