16 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl32	60S ribosomal protein L32. (135 aa)
	rpl10	60S ribosomal protein L10. (215 aa)
	LOC106521912	60S ribosomal protein L26. (145 aa)
	rpl4	60S ribosomal protein L4. (369 aa)
	rpl6	60S ribosomal protein L6. (259 aa)
	rplp1	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	LOC106516986	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (195 aa)
	rpl30	60S ribosomal protein L30. (116 aa)
	zcchc17	Nucleolar protein of 40 kDa. (244 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	rpl9	60S ribosomal protein L9 isoform X1. (193 aa)
	rpl15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rpl35a	60S ribosomal protein L35a. (110 aa)
	rpl31	60S ribosomal protein L31. (124 aa)
	LOC106527632	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106516986	LOC106521912	A0A2I4B5R9	A0A2I4BQX7	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L26.	0.996
LOC106516986	LOC106527632	A0A2I4B5R9	A0A2I4CDG3	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.900
LOC106516986	rpl10	A0A2I4B5R9	A0A2I4BVJ8	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L10.	0.986
LOC106516986	rpl15	A0A2I4B5R9	A0A2I4CY59	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.994
LOC106516986	rpl18a	A0A2I4B5R9	A0A2I4CWQ3	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.993
LOC106516986	rpl29	A0A2I4B5R9	A0A2I4AVR3	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.994
LOC106516986	rpl30	A0A2I4B5R9	A0A2I4B0S2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L30.	0.995
LOC106516986	rpl31	A0A2I4B5R9	A0A2I4CJE5	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L31.	0.995
LOC106516986	rpl32	A0A2I4B5R9	A0A2I4BWI6	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L32.	0.996
LOC106516986	rpl35a	A0A2I4B5R9	A0A2I4CW61	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L35a.	0.994
LOC106516986	rpl4	A0A2I4B5R9	A0A2I4BN13	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L4.	0.995
LOC106516986	rpl6	A0A2I4B5R9	A0A2I4BHN1	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L6.	0.995
LOC106516986	rpl9	A0A2I4B5R9	A0A2I4D6P2	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S ribosomal protein L9 isoform X1.	0.995
LOC106516986	rplp1	A0A2I4B5R9	A0A2I4BAI9	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.992
LOC106521912	LOC106516986	A0A2I4BQX7	A0A2I4B5R9	60S ribosomal protein L26.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.996
LOC106521912	LOC106527632	A0A2I4BQX7	A0A2I4CDG3	60S ribosomal protein L26.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.996
LOC106521912	rpl10	A0A2I4BQX7	A0A2I4BVJ8	60S ribosomal protein L26.	60S ribosomal protein L10.	0.999
LOC106521912	rpl15	A0A2I4BQX7	A0A2I4CY59	60S ribosomal protein L26.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
LOC106521912	rpl18a	A0A2I4BQX7	A0A2I4CWQ3	60S ribosomal protein L26.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
LOC106521912	rpl29	A0A2I4BQX7	A0A2I4AVR3	60S ribosomal protein L26.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999