35 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lancl3	lanC-like protein 3. (407 aa)
	LOC106528073	Serine/arginine repetitive matrix protein 5-like. (380 aa)
	anln	Actin-binding protein anillin. (1113 aa)
	lancl1	lanC-like protein 1. (402 aa)
	cald1	Caldesmon. (364 aa)
	LOC106528136	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (527 aa)
	LOC106528141	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (221 aa)
	LOC106531827	Parvalbumin, thymic CPV3-like; Belongs to the parvalbumin family. (109 aa)
	LOC106532661	Spectrin beta chain; Belongs to the spectrin family. (2356 aa)
	LOC106533260	Neural Wiskott-Aldrich syndrome protein-like. (235 aa)
	LOC106533532	Rhotekin-like isoform X1. (455 aa)
	LOC106534386	Protein MNN4-like. (160 aa)
	kncn	Kinocilin. (146 aa)
	LOC106528487	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (705 aa)
	LOC106526527	Pleckstrin homology domain-containing family H member 2-like isoform X1. (1473 aa)
	actn3	Alpha-actinin-3. (910 aa)
	LOC106530135	Alpha-actinin-1 isoform X2. (912 aa)
	LOC106536526	Alpha-actinin-4-like isoform X2. (849 aa)
	LOC106523709	Myeloid-associated differentiation marker homolog. (282 aa)
	LOC106522065	Parvalbumin, thymic CPV3-like; Belongs to the parvalbumin family. (109 aa)
	LOC106521766	Neural Wiskott-Aldrich syndrome protein-like. (505 aa)
	LOC106534671	Rhotekin-2-like. (694 aa)
	LOC106534881	Rhotekin-like. (462 aa)
	LOC106535863	Actin-binding protein anillin-like. (1208 aa)
	LOC106511431	Alpha-actinin-2 isoform X1. (894 aa)
	LOC106516543	Parvalbumin-7-like; Belongs to the parvalbumin family. (109 aa)
	LOC106517225	Neural Wiskott-Aldrich syndrome protein-like. (535 aa)
	LOC106517327	Myeloid-associated differentiation marker-like protein 2. (297 aa)
	lancl2	lanC-like protein 2 isoform X1. (427 aa)
	was	wiskott-Aldrich syndrome protein. (542 aa)
	LOC106520405	Myeloid-associated differentiation marker homolog. (285 aa)
	LOC106520782	Myeloid-associated differentiation marker homolog. (293 aa)
	rtkn	Rhotekin. (694 aa)
	LOC106520402	Myeloid-associated differentiation marker homolog. (292 aa)
	LOC106520404	Myeloid-associated differentiation marker homolog. (287 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106517225	LOC106521766	A0A2I4B6N8	A0A2I4BQB0	Neural Wiskott-Aldrich syndrome protein-like.	Neural Wiskott-Aldrich syndrome protein-like.	0.901
LOC106517225	LOC106528073	A0A2I4B6N8	A0A2I4CF28	Neural Wiskott-Aldrich syndrome protein-like.	Serine/arginine repetitive matrix protein 5-like.	0.413
LOC106521766	LOC106517225	A0A2I4BQB0	A0A2I4B6N8	Neural Wiskott-Aldrich syndrome protein-like.	Neural Wiskott-Aldrich syndrome protein-like.	0.901
LOC106521766	LOC106528073	A0A2I4BQB0	A0A2I4CF28	Neural Wiskott-Aldrich syndrome protein-like.	Serine/arginine repetitive matrix protein 5-like.	0.413
LOC106528073	LOC106517225	A0A2I4CF28	A0A2I4B6N8	Serine/arginine repetitive matrix protein 5-like.	Neural Wiskott-Aldrich syndrome protein-like.	0.413
LOC106528073	LOC106521766	A0A2I4CF28	A0A2I4BQB0	Serine/arginine repetitive matrix protein 5-like.	Neural Wiskott-Aldrich syndrome protein-like.	0.413
LOC106528073	LOC106533260	A0A2I4CF28	A0A2I4CY78	Serine/arginine repetitive matrix protein 5-like.	Neural Wiskott-Aldrich syndrome protein-like.	0.413
LOC106528073	was	A0A2I4CF28	A0A2I4BF94	Serine/arginine repetitive matrix protein 5-like.	wiskott-Aldrich syndrome protein.	0.413
LOC106528136	LOC106528141	A0A2I4CFA9	A0A2I4CFB5	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.584
LOC106528136	LOC106528487	A0A2I4CFA9	A0A2I4CGK5	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.901
LOC106528141	LOC106528136	A0A2I4CFB5	A0A2I4CFA9	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.584
LOC106528487	LOC106528136	A0A2I4CGK5	A0A2I4CFA9	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.901
LOC106530135	LOC106536526	A0A2I4CMD4	A0A2I4DAK6	Alpha-actinin-1 isoform X2.	Alpha-actinin-4-like isoform X2.	0.900
LOC106533260	LOC106528073	A0A2I4CY78	A0A2I4CF28	Neural Wiskott-Aldrich syndrome protein-like.	Serine/arginine repetitive matrix protein 5-like.	0.413
LOC106534671	LOC106535863	A0A2I4D3S5	A0A2I4D897	Rhotekin-2-like.	Actin-binding protein anillin-like.	0.407
LOC106534671	anln	A0A2I4D3S5	A0A2I4CL62	Rhotekin-2-like.	Actin-binding protein anillin.	0.407
LOC106535863	LOC106534671	A0A2I4D897	A0A2I4D3S5	Actin-binding protein anillin-like.	Rhotekin-2-like.	0.407
LOC106535863	rtkn	A0A2I4D897	A0A2I4BJT4	Actin-binding protein anillin-like.	Rhotekin.	0.407
LOC106536526	LOC106530135	A0A2I4DAK6	A0A2I4CMD4	Alpha-actinin-4-like isoform X2.	Alpha-actinin-1 isoform X2.	0.900
anln	LOC106534671	A0A2I4CL62	A0A2I4D3S5	Actin-binding protein anillin.	Rhotekin-2-like.	0.407