(15 nodes) Dendritic shaft network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106527994	Protein cornichon homolog 3-like isoform X1. (174 aa)
	LOC106527878	Seizure protein 6 homolog. (493 aa)
	LOC106524607	FERM and PDZ domain-containing protein 1-like. (2030 aa)
	LOC106523229	Glutamate receptor-interacting protein 2-like isoform X1. (1128 aa)
	cnih2	Protein cornichon homolog 2. (160 aa)
	LOC106536310	Seizure protein 6-like. (395 aa)
	cript	Cysteine-rich PDZ-binding protein. (101 aa)
	sez6	Seizure protein 6 homolog isoform X1. (1025 aa)
	LOC106511301	Leucine zipper putative tumor suppressor 1-like. (655 aa)
	LOC106537019	Glutamate receptor-interacting protein 2-like isoform X1. (692 aa)
	LOC106517186	FERM and PDZ domain-containing protein 1-like. (412 aa)
	LOC106535157	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (428 aa)
	LOC106534535	FERM and PDZ domain-containing protein 1-like. (1705 aa)
	LOC106532604	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (486 aa)
	LOC106530820	Glutamate receptor-interacting protein 2-like. (1154 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106527878	LOC106536310	A0A2I4CEC3	A0A2I4D9R6	Seizure protein 6 homolog.	Seizure protein 6-like.	0.718
LOC106532604	LOC106535157	A0A2I4CW02	A0A2I4D5M1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.939
LOC106535157	LOC106532604	A0A2I4D5M1	A0A2I4CW02	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.939
LOC106536310	LOC106527878	A0A2I4D9R6	A0A2I4CEC3	Seizure protein 6-like.	Seizure protein 6 homolog.	0.718