(18 nodes) Link domain network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lyve1	Lymphatic vessel endothelial hyaluronic acid receptor 1 isoform X1. (313 aa)
	LOC106529603	Hyaluronan and proteoglycan link protein 3-like. (377 aa)
	hapln2	Hyaluronan and proteoglycan link protein 2 isoform X1. (371 aa)
	bcan	Brevican core protein. (1221 aa)
	LOC106526743	Neurocan core protein-like. (1308 aa)
	LOC106526642	Aggrecan core protein-like. (1319 aa)
	LOC106526048	Hyaluronan and proteoglycan link protein 1-like. (353 aa)
	LOC106526050	Versican core protein-like. (1313 aa)
	hapln4	Hyaluronan and proteoglycan link protein 4. (396 aa)
	ncan	Neurocan core protein. (1321 aa)
	stab1	Stabilin-1. (2548 aa)
	LOC106518125	Aggrecan core protein-like. (1759 aa)
	LOC106517509	Hyaluronan and proteoglycan link protein 1-like. (334 aa)
	LOC106517450	Versican core protein-like. (978 aa)
	susd5	Sushi domain-containing protein 5. (831 aa)
	LOC106510809	CD44 antigen-like. (367 aa)
	LOC106536645	Tumor necrosis factor-inducible gene 6 protein-like. (260 aa)
	stab2	Stabilin-2. (2359 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510809	LOC106517450	A0A2I4AHP1	A0A2I4B7P6	CD44 antigen-like.	Versican core protein-like.	0.658
LOC106510809	LOC106526642	A0A2I4AHP1	A0A2I4C9T1	CD44 antigen-like.	Aggrecan core protein-like.	0.469
LOC106510809	LOC106536645	A0A2I4AHP1	A0A2I4DAZ7	CD44 antigen-like.	Tumor necrosis factor-inducible gene 6 protein-like.	0.718
LOC106510809	lyve1	A0A2I4AHP1	A0A2I4CQU6	CD44 antigen-like.	Lymphatic vessel endothelial hyaluronic acid receptor 1 isoform X1.	0.595
LOC106510809	stab1	A0A2I4AHP1	A0A2I4BSU3	CD44 antigen-like.	Stabilin-1.	0.462
LOC106510809	stab2	A0A2I4AHP1	A0A2I4D611	CD44 antigen-like.	Stabilin-2.	0.462
LOC106517450	LOC106510809	A0A2I4B7P6	A0A2I4AHP1	Versican core protein-like.	CD44 antigen-like.	0.658
LOC106517450	LOC106517509	A0A2I4B7P6	A0A2I4B806	Versican core protein-like.	Hyaluronan and proteoglycan link protein 1-like.	0.577
LOC106517450	LOC106518125	A0A2I4B7P6	A0A2I4BA94	Versican core protein-like.	Aggrecan core protein-like.	0.537
LOC106517450	LOC106526048	A0A2I4B7P6	A0A2I4C7I6	Versican core protein-like.	Hyaluronan and proteoglycan link protein 1-like.	0.561
LOC106517450	LOC106526642	A0A2I4B7P6	A0A2I4C9T1	Versican core protein-like.	Aggrecan core protein-like.	0.632
LOC106517450	bcan	A0A2I4B7P6	A0A2I4CJ51	Versican core protein-like.	Brevican core protein.	0.537
LOC106517509	LOC106517450	A0A2I4B806	A0A2I4B7P6	Hyaluronan and proteoglycan link protein 1-like.	Versican core protein-like.	0.577
LOC106517509	LOC106526642	A0A2I4B806	A0A2I4C9T1	Hyaluronan and proteoglycan link protein 1-like.	Aggrecan core protein-like.	0.831
LOC106518125	LOC106517450	A0A2I4BA94	A0A2I4B7P6	Aggrecan core protein-like.	Versican core protein-like.	0.537
LOC106518125	LOC106526642	A0A2I4BA94	A0A2I4C9T1	Aggrecan core protein-like.	Aggrecan core protein-like.	0.519
LOC106518125	LOC106526743	A0A2I4BA94	A0A2I4CA65	Aggrecan core protein-like.	Neurocan core protein-like.	0.420
LOC106518125	ncan	A0A2I4BA94	A0A2I4BWU9	Aggrecan core protein-like.	Neurocan core protein.	0.420
LOC106526048	LOC106517450	A0A2I4C7I6	A0A2I4B7P6	Hyaluronan and proteoglycan link protein 1-like.	Versican core protein-like.	0.561
LOC106526048	LOC106526642	A0A2I4C7I6	A0A2I4C9T1	Hyaluronan and proteoglycan link protein 1-like.	Aggrecan core protein-like.	0.831