(13 nodes) RWD domain network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rnf25	E3 ubiquitin-protein ligase RNF25. (262 aa)
	wdr59	WD repeat-containing protein 59 isoform X1. (978 aa)
	LOC106532001	Protein IMPACT-like. (319 aa)
	rwdd4	RWD domain-containing protein 4 isoform X1. (141 aa)
	LOC106530670	RWD domain-containing protein 1-like. (240 aa)
	LOC106529544	RBR-type E3 ubiquitin transferase. (538 aa)
	rwdd3	RWD domain-containing protein 3 isoform X1. (257 aa)
	dhx57	Putative ATP-dependent RNA helicase DHX57. (1417 aa)
	rnf14	RBR-type E3 ubiquitin transferase. (481 aa)
	rwdd2b	RWD domain-containing protein 2B. (297 aa)
	eif2ak4	Eukaryotic translation initiation factor 2-alpha kinase 4. (1659 aa)
	LOC106512024	RWD domain-containing protein 1-like. (240 aa)
	LOC106511039	Protein IMPACT-like. (318 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106511039	LOC106512024	A0A2I4AIC1	A0A2I4AKZ7	Protein IMPACT-like.	RWD domain-containing protein 1-like.	0.405
LOC106511039	LOC106530670	A0A2I4AIC1	A0A2I4CP57	Protein IMPACT-like.	RWD domain-containing protein 1-like.	0.405
LOC106512024	LOC106511039	A0A2I4AKZ7	A0A2I4AIC1	RWD domain-containing protein 1-like.	Protein IMPACT-like.	0.405
LOC106512024	LOC106532001	A0A2I4AKZ7	A0A2I4CTW5	RWD domain-containing protein 1-like.	Protein IMPACT-like.	0.405
LOC106530670	LOC106511039	A0A2I4CP57	A0A2I4AIC1	RWD domain-containing protein 1-like.	Protein IMPACT-like.	0.405
LOC106530670	LOC106532001	A0A2I4CP57	A0A2I4CTW5	RWD domain-containing protein 1-like.	Protein IMPACT-like.	0.405
LOC106532001	LOC106512024	A0A2I4CTW5	A0A2I4AKZ7	Protein IMPACT-like.	RWD domain-containing protein 1-like.	0.405
LOC106532001	LOC106530670	A0A2I4CTW5	A0A2I4CP57	Protein IMPACT-like.	RWD domain-containing protein 1-like.	0.405