(30 nodes) Extended PHD (ePHD) domain network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106516196	Bromodomain and PHD finger-containing protein 3-like isoform X1. (1240 aa)
	kdm4a	Lysine-specific demethylase 4A isoform X1. (1045 aa)
	kmt2b	Histone-lysine N-methyltransferase 2B isoform X1. (3818 aa)
	LOC106518910	Bromodomain and PHD finger-containing protein 3-like. (1241 aa)
	LOC106519213	Lysine-specific demethylase 4B-like. (1292 aa)
	jade1	Protein Jade-1. (870 aa)
	tcf20	Transcription factor 20. (2405 aa)
	brd1	Bromodomain-containing protein 1. (1239 aa)
	brpf1	Peregrin isoform X1. (1307 aa)
	jade2	Protein Jade-2. (861 aa)
	LOC106524779	Protein AF-10-like. (1005 aa)
	kmt2d	Histone-lysine N-methyltransferase 2D isoform X1. (4842 aa)
	phf14	PHD finger protein 14. (941 aa)
	jade3	Protein Jade-3. (795 aa)
	mllt6	Protein AF-17. (1027 aa)
	g2e3	G2/M phase-specific E3 ubiquitin-protein ligase. (719 aa)
	phf6	PHD finger protein 6. (364 aa)
	LOC106530979	Bromodomain-containing protein 1-like isoform X1. (1166 aa)
	LOC106531977	Lysine-specific demethylase 4A-like. (1173 aa)
	LOC106532529	Lysine-specific demethylase 4C-like isoform X1. (1591 aa)
	LOC106532560	Transcription factor 20-like isoform X1. (911 aa)
	LOC106533539	Retinoic acid-induced protein 1-like isoform X1. (2229 aa)
	kmt2a	Histone-lysine N-methyltransferase 2A isoform X1. (4514 aa)
	kmt2c	Histone-lysine N-methyltransferase 2C. (3565 aa)
	LOC106534301	Histone-lysine N-methyltransferase 2C-like isoform X1. (4963 aa)
	LOC106535402	Titin-like. (3457 aa)
	LOC106535403	Uncharacterized protein LOC106535403. (670 aa)
	LOC106536543	PHD finger protein 14-like. (593 aa)
	LOC106536579	Uncharacterized protein DDB_G0284459-like. (552 aa)
	LOC106537143	Histone-lysine N-methyltransferase 2B-like. (2993 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106516196	LOC106530979	A0A2I4B296	A0A2I4CQ95	Bromodomain and PHD finger-containing protein 3-like isoform X1.	Bromodomain-containing protein 1-like isoform X1.	0.552
LOC106516196	brd1	A0A2I4B296	A0A2I4BQG9	Bromodomain and PHD finger-containing protein 3-like isoform X1.	Bromodomain-containing protein 1.	0.551
LOC106516196	brpf1	A0A2I4B296	A0A2I4BU12	Bromodomain and PHD finger-containing protein 3-like isoform X1.	Peregrin isoform X1.	0.550
LOC106518910	LOC106530979	A0A2I4BDJ0	A0A2I4CQ95	Bromodomain and PHD finger-containing protein 3-like.	Bromodomain-containing protein 1-like isoform X1.	0.551
LOC106518910	brd1	A0A2I4BDJ0	A0A2I4BQG9	Bromodomain and PHD finger-containing protein 3-like.	Bromodomain-containing protein 1.	0.550
LOC106518910	brpf1	A0A2I4BDJ0	A0A2I4BU12	Bromodomain and PHD finger-containing protein 3-like.	Peregrin isoform X1.	0.548
LOC106530979	LOC106516196	A0A2I4CQ95	A0A2I4B296	Bromodomain-containing protein 1-like isoform X1.	Bromodomain and PHD finger-containing protein 3-like isoform X1.	0.552
LOC106530979	LOC106518910	A0A2I4CQ95	A0A2I4BDJ0	Bromodomain-containing protein 1-like isoform X1.	Bromodomain and PHD finger-containing protein 3-like.	0.551
LOC106534301	LOC106537143	A0A2I4D268	A0A2I4DCJ8	Histone-lysine N-methyltransferase 2C-like isoform X1.	Histone-lysine N-methyltransferase 2B-like.	0.441
LOC106534301	kmt2a	A0A2I4D268	A0A2I4D108	Histone-lysine N-methyltransferase 2C-like isoform X1.	Histone-lysine N-methyltransferase 2A isoform X1.	0.441
LOC106534301	kmt2b	A0A2I4D268	A0A2I4B8V2	Histone-lysine N-methyltransferase 2C-like isoform X1.	Histone-lysine N-methyltransferase 2B isoform X1.	0.441
LOC106535402	LOC106537143	A0A2I4D6I5	A0A2I4DCJ8	Titin-like.	Histone-lysine N-methyltransferase 2B-like.	0.441
LOC106535402	kmt2a	A0A2I4D6I5	A0A2I4D108	Titin-like.	Histone-lysine N-methyltransferase 2A isoform X1.	0.441
LOC106535402	kmt2b	A0A2I4D6I5	A0A2I4B8V2	Titin-like.	Histone-lysine N-methyltransferase 2B isoform X1.	0.441
LOC106537143	LOC106534301	A0A2I4DCJ8	A0A2I4D268	Histone-lysine N-methyltransferase 2B-like.	Histone-lysine N-methyltransferase 2C-like isoform X1.	0.441
LOC106537143	LOC106535402	A0A2I4DCJ8	A0A2I4D6I5	Histone-lysine N-methyltransferase 2B-like.	Titin-like.	0.441
LOC106537143	kmt2c	A0A2I4DCJ8	A0A2I4D1D4	Histone-lysine N-methyltransferase 2B-like.	Histone-lysine N-methyltransferase 2C.	0.441
LOC106537143	kmt2d	A0A2I4DCJ8	A0A2I4C2U9	Histone-lysine N-methyltransferase 2B-like.	Histone-lysine N-methyltransferase 2D isoform X1.	0.441
brd1	LOC106516196	A0A2I4BQG9	A0A2I4B296	Bromodomain-containing protein 1.	Bromodomain and PHD finger-containing protein 3-like isoform X1.	0.551
brd1	LOC106518910	A0A2I4BQG9	A0A2I4BDJ0	Bromodomain-containing protein 1.	Bromodomain and PHD finger-containing protein 3-like.	0.550