49 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	nup88	Nuclear pore complex protein Nup88. (720 aa)
	LOC106523318	Small ubiquitin-related modifier. (94 aa)
	pom121	Nuclear envelope pore membrane protein POM 121. (1110 aa)
	LOC106524922	Nucleoprotein TPR-like isoform X1. (2502 aa)
	LOC106525016	Protein FAM111A-like. (297 aa)
	sec13	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (320 aa)
	rae1	mRNA export factor isoform X1. (369 aa)
	nup37	Nucleoporin Nup37. (326 aa)
	nup160	Nuclear pore complex protein Nup160 isoform X1. (1419 aa)
	nup133	Nuclear pore complex protein Nup133. (1137 aa)
	LOC106532103	Nuclear pore complex protein Nup98-Nup96-like. (1631 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	LOC106532104	Nuclear pore complex protein Nup98-Nup96-like. (90 aa)
	LOC106511350	Nuclear pore complex protein Nup98-Nup96-like. (951 aa)
	aaas	Aladin isoform X1. (518 aa)
	LOC106511517	Nuclear pore complex protein Nup133-like. (510 aa)
	LOC106511650	Nuclear pore complex protein Nup133-like. (480 aa)
	LOC106511762	Nuclear pore complex protein Nup98-Nup96-like. (208 aa)
	LOC106511761	Nuclear pore complex protein Nup98-Nup96-like. (318 aa)
	LOC106511756	Nuclear pore complex protein Nup98-Nup96-like. (212 aa)
	LOC106511993	Nucleoprotein TPR-like isoform X1. (313 aa)
	nup62	Nuclear pore glycoprotein p62. (535 aa)
	nup155	Nuclear pore complex protein Nup155. (1367 aa)
	pias4	E3 SUMO-protein ligase PIAS4. (508 aa)
	LOC106515271	Small ubiquitin-related modifier. (96 aa)
	nup188	Nucleoporin NUP188 homolog isoform X1. (1750 aa)
	tpr	Nucleoprotein TPR. (1975 aa)
	ranbp3	Ran-binding protein 3 isoform X1. (517 aa)
	ndc1	Nucleoporin NDC1 isoform X1. (668 aa)
	LOC106517370	SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
	nup58	Nucleoporin p58/p45 isoform X1. (590 aa)
	LOC106518458	Small ubiquitin-related modifier. (94 aa)
	nup210	Nuclear pore membrane glycoprotein 210. (1880 aa)
	seh1l	Nucleoporin SEH1 isoform X1; Belongs to the WD repeat SEC13 family. (415 aa)
	nupl2	Nucleoporin-like protein 2. (431 aa)
	ranbp2	E3 SUMO-protein ligase RanBP2. (3036 aa)
	ube2i	SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	LOC106521991	BTB/POZ domain-containing protein KCTD5-like. (265 aa)
	nup205	Nuclear pore complex protein Nup205. (1993 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (819 aa)
	LOC106536045	Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like. (640 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (906 aa)
	topors	E3 ubiquitin-protein ligase Topors. (791 aa)
	nup50	Nuclear pore complex protein Nup50. (443 aa)
	nup35	Nucleoporin NUP53. (280 aa)
	nup43	Nucleoporin Nup43. (369 aa)
	LOC106532708	Protein FAM111A-like. (366 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106511350	LOC106511517	A0A2I4AJ60	A0A2I4AJS7	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup133-like.	0.777
LOC106511350	LOC106511650	A0A2I4AJ60	A0A2I4AK63	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup133-like.	0.777
LOC106511350	LOC106511756	A0A2I4AJ60	A0A2I4AKF8	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup98-Nup96-like.	0.929
LOC106511350	LOC106511762	A0A2I4AJ60	A0A2I4AKB3	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup98-Nup96-like.	0.714
LOC106511350	LOC106511993	A0A2I4AJ60	A0A2I4AKW9	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoprotein TPR-like isoform X1.	0.640
LOC106511350	LOC106517370	A0A2I4AJ60	A0A2I4B789	Nuclear pore complex protein Nup98-Nup96-like.	SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family.	0.484
LOC106511350	LOC106521991	A0A2I4AJ60	A0A2I4BR74	Nuclear pore complex protein Nup98-Nup96-like.	BTB/POZ domain-containing protein KCTD5-like.	0.450
LOC106511350	LOC106524922	A0A2I4AJ60	A0A2I4C344	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoprotein TPR-like isoform X1.	0.640
LOC106511350	LOC106532103	A0A2I4AJ60	A0A2I4CU87	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup98-Nup96-like.	0.901
LOC106511350	aaas	A0A2I4AJ60	A0A2I4AJ78	Nuclear pore complex protein Nup98-Nup96-like.	Aladin isoform X1.	0.742
LOC106511350	ndc1	A0A2I4AJ60	A0A2I4B5B4	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin NDC1 isoform X1.	0.731
LOC106511350	nup107	A0A2I4AJ60	A0A2I4D7X6	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.872
LOC106511350	nup133	A0A2I4AJ60	A0A2I4CRL6	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup133.	0.777
LOC106511350	nup155	A0A2I4AJ60	A0A2I4AUI1	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup155.	0.869
LOC106511350	nup160	A0A2I4AJ60	A0A2I4CQG2	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup160 isoform X1.	0.863
LOC106511350	nup188	A0A2I4AJ60	A0A2I4B2L6	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin NUP188 homolog isoform X1.	0.790
LOC106511350	nup205	A0A2I4AJ60	A0A2I4DCP2	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup205.	0.840
LOC106511350	nup210	A0A2I4AJ60	A0A2I4BE60	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore membrane glycoprotein 210.	0.789
LOC106511350	nup35	A0A2I4AJ60	A0A2I4D448	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin NUP53.	0.825
LOC106511350	nup37	A0A2I4AJ60	A0A2I4CMT1	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin Nup37.	0.983