56 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106511350	Nuclear pore complex protein Nup98-Nup96-like. (951 aa)
	LOC106537197	E3 SUMO-protein ligase CBX4-like. (549 aa)
	nup205	Nuclear pore complex protein Nup205. (1993 aa)
	bmi1	Polycomb complex protein BMI-1. (336 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (819 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (906 aa)
	nup50	Nuclear pore complex protein Nup50. (443 aa)
	nup35	Nucleoporin NUP53. (280 aa)
	nup43	Nucleoporin Nup43. (369 aa)
	LOC106532708	Protein FAM111A-like. (366 aa)
	LOC106532296	Heterogeneous nuclear ribonucleoprotein C-like isoform X1. (302 aa)
	LOC106532103	Nuclear pore complex protein Nup98-Nup96-like. (1631 aa)
	LOC106532104	Nuclear pore complex protein Nup98-Nup96-like. (90 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	nup133	Nuclear pore complex protein Nup133. (1137 aa)
	nup160	Nuclear pore complex protein Nup160 isoform X1. (1419 aa)
	nup37	Nucleoporin Nup37. (326 aa)
	ring1	E3 ubiquitin-protein ligase RING1. (384 aa)
	nop58	Nucleolar protein 58 isoform X1. (514 aa)
	hnrnpk	Heterogeneous nuclear ribonucleoprotein K isoform X1. (438 aa)
	rae1	mRNA export factor isoform X1. (369 aa)
	LOC106525016	Protein FAM111A-like. (297 aa)
	LOC106524922	Nucleoprotein TPR-like isoform X1. (2502 aa)
	pom121	Nuclear envelope pore membrane protein POM 121. (1110 aa)
	LOC106524490	E3 SUMO-protein ligase CBX4-like. (543 aa)
	LOC106524489	Chromobox protein homolog 8-like. (347 aa)
	LOC106523318	Small ubiquitin-related modifier. (94 aa)
	nup88	Nuclear pore complex protein Nup88. (720 aa)
	rnf2	E3 ubiquitin-protein ligase RING2. (354 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	LOC106521991	BTB/POZ domain-containing protein KCTD5-like. (265 aa)
	LOC106520777	Heterogeneous nuclear ribonucleoprotein C-like. (319 aa)
	ube2i	SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	ranbp2	E3 SUMO-protein ligase RanBP2. (3036 aa)
	LOC106519598	Polyhomeotic-like protein 1 isoform X1. (956 aa)
	nupl2	Nucleoporin-like protein 2. (431 aa)
	seh1l	Nucleoporin SEH1 isoform X1; Belongs to the WD repeat SEC13 family. (415 aa)
	nup210	Nuclear pore membrane glycoprotein 210. (1880 aa)
	LOC106518743	Chromobox protein homolog 8-like. (317 aa)
	LOC106518458	Small ubiquitin-related modifier. (94 aa)
	nup58	Nucleoporin p58/p45 isoform X1. (590 aa)
	LOC106517370	SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
	ranbp3	Ran-binding protein 3 isoform X1. (517 aa)
	tpr	Nucleoprotein TPR. (1975 aa)
	nup188	Nucleoporin NUP188 homolog isoform X1. (1750 aa)
	LOC106516248	Heterogeneous nuclear ribonucleoprotein K-like. (417 aa)
	LOC106515271	Small ubiquitin-related modifier. (96 aa)
	nup155	Nuclear pore complex protein Nup155. (1367 aa)
	LOC106511993	Nucleoprotein TPR-like isoform X1. (313 aa)
	LOC106511756	Nuclear pore complex protein Nup98-Nup96-like. (212 aa)
	LOC106511761	Nuclear pore complex protein Nup98-Nup96-like. (318 aa)
	LOC106511762	Nuclear pore complex protein Nup98-Nup96-like. (208 aa)
	LOC106511650	Nuclear pore complex protein Nup133-like. (480 aa)
	LOC106511517	Nuclear pore complex protein Nup133-like. (510 aa)
	aaas	Aladin isoform X1. (518 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106511350	LOC106511517	A0A2I4AJ60	A0A2I4AJS7	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup133-like.	0.777
LOC106511350	LOC106511650	A0A2I4AJ60	A0A2I4AK63	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup133-like.	0.777
LOC106511350	LOC106511756	A0A2I4AJ60	A0A2I4AKF8	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup98-Nup96-like.	0.929
LOC106511350	LOC106511762	A0A2I4AJ60	A0A2I4AKB3	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup98-Nup96-like.	0.714
LOC106511350	LOC106511993	A0A2I4AJ60	A0A2I4AKW9	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoprotein TPR-like isoform X1.	0.640
LOC106511350	LOC106517370	A0A2I4AJ60	A0A2I4B789	Nuclear pore complex protein Nup98-Nup96-like.	SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family.	0.484
LOC106511350	LOC106521991	A0A2I4AJ60	A0A2I4BR74	Nuclear pore complex protein Nup98-Nup96-like.	BTB/POZ domain-containing protein KCTD5-like.	0.450
LOC106511350	LOC106524922	A0A2I4AJ60	A0A2I4C344	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoprotein TPR-like isoform X1.	0.640
LOC106511350	LOC106532103	A0A2I4AJ60	A0A2I4CU87	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup98-Nup96-like.	0.901
LOC106511350	aaas	A0A2I4AJ60	A0A2I4AJ78	Nuclear pore complex protein Nup98-Nup96-like.	Aladin isoform X1.	0.742
LOC106511350	nup107	A0A2I4AJ60	A0A2I4D7X6	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.872
LOC106511350	nup133	A0A2I4AJ60	A0A2I4CRL6	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup133.	0.777
LOC106511350	nup155	A0A2I4AJ60	A0A2I4AUI1	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup155.	0.869
LOC106511350	nup160	A0A2I4AJ60	A0A2I4CQG2	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup160 isoform X1.	0.863
LOC106511350	nup188	A0A2I4AJ60	A0A2I4B2L6	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin NUP188 homolog isoform X1.	0.790
LOC106511350	nup205	A0A2I4AJ60	A0A2I4DCP2	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore complex protein Nup205.	0.840
LOC106511350	nup210	A0A2I4AJ60	A0A2I4BE60	Nuclear pore complex protein Nup98-Nup96-like.	Nuclear pore membrane glycoprotein 210.	0.789
LOC106511350	nup35	A0A2I4AJ60	A0A2I4D448	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin NUP53.	0.825
LOC106511350	nup37	A0A2I4AJ60	A0A2I4CMT1	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin Nup37.	0.983
LOC106511350	nup43	A0A2I4AJ60	A0A2I4D434	Nuclear pore complex protein Nup98-Nup96-like.	Nucleoporin Nup43.	0.858