STRINGSTRING
LOC106536681 LOC106536681 ercc5 ercc5 ccnh ccnh LOC106531760 LOC106531760 rnf111 rnf111 sumo1 sumo1 gtf2h4 gtf2h4 LOC106529189 LOC106529189 vwa5b2 vwa5b2 xpa xpa bivm bivm rpa2 rpa2 parp1 parp1 ercc1 ercc1 usp45 usp45 LOC106525898 LOC106525898 meiob meiob rpa3 rpa3 ddb1 ddb1 gtf2h3 gtf2h3 LOC106523505 LOC106523505 LOC106523318 LOC106523318 ercc2 ercc2 sumo2 sumo2 LOC106521991 LOC106521991 LOC106521775 LOC106521775 LOC106521199 LOC106521199 gtf2h1 gtf2h1 LOC106520903 LOC106520903 parp2 parp2 rbx1 rbx1 LOC106520637 LOC106520637 ube2i ube2i kxd1 kxd1 uba52 uba52 wdr76 wdr76 LOC106518873 LOC106518873 LOC106518458 LOC106518458 parp3 parp3 LOC106517805 LOC106517805 LOC106517370 LOC106517370 LOC106515610 LOC106515610 LOC106515271 LOC106515271 cul4b cul4b cul4a cul4a ercc3 ercc3 LOC106513356 LOC106513356 xpc xpc LOC106512962 LOC106512962 LOC106512465 LOC106512465 LOC106511409 LOC106511409 gtf2h5 gtf2h5 rps27a rps27a LOC106532020 LOC106532020 mnat1 mnat1 LOC106532945 LOC106532945 LOC106533213 LOC106533213 ube2v2 ube2v2 cdk7 cdk7 ddb2 ddb2 LOC106535087 LOC106535087 LOC106535088 LOC106535088 nfatc2ip nfatc2ip ercc4 ercc4 LOC106535939 LOC106535939 LOC106536601 LOC106536601 LOC106536602 LOC106536602
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC106536681Ubiquitin-conjugating enzyme E2 variant 1-like. (170 aa)
ercc5DNA repair protein complementing XP-G cells. (1067 aa)
ccnhcyclin-H; Belongs to the cyclin family. (319 aa)
LOC106531760General transcription factor IIH subunit. (392 aa)
rnf111LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Arkadia. (1015 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (465 aa)
LOC106529189Uncharacterized protein LOC106529189. (981 aa)
vwa5b2Von Willebrand factor A domain-containing protein 5B2. (1385 aa)
xpaDNA repair protein complementing XP-A cells. (270 aa)
bivmBasic immunoglobulin-like variable motif-containing protein isoform X1. (506 aa)
rpa2Replication protein A 32 kDa subunit. (272 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1000 aa)
ercc1DNA excision repair protein ERCC-1. (354 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (808 aa)
LOC106525898Caltractin-like. (212 aa)
meiobMeiosis-specific with OB domain-containing protein. (463 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
gtf2h3General transcription factor IIH subunit 3 isoform X1. (300 aa)
LOC106523505Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (665 aa)
LOC106523318Small ubiquitin-related modifier. (94 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (782 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
LOC106521991BTB/POZ domain-containing protein KCTD5-like. (265 aa)
LOC106521775Ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
LOC106521199E3 SUMO-protein ligase PIAS1-like isoform X1. (679 aa)
gtf2h1General transcription factor IIH subunit 1. (550 aa)
LOC106520903Serine/arginine repetitive matrix protein 1-like. (1044 aa)
parp2Poly [ADP-ribose] polymerase. (648 aa)
rbx1E3 ubiquitin-protein ligase RBX1. (108 aa)
LOC106520637Uncharacterized protein LOC106520637. (870 aa)
ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
kxd1kxDL motif-containing protein 1. (181 aa)
uba52ubiquitin-60S ribosomal protein L40. (128 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (545 aa)
LOC106518873Ubiquitin-like. (76 aa)
LOC106518458Small ubiquitin-related modifier. (94 aa)
parp3Poly [ADP-ribose] polymerase. (583 aa)
LOC106517805UV excision repair protein RAD23 homolog A-like. (365 aa)
LOC106517370SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
LOC106515610Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
LOC106515271Small ubiquitin-related modifier. (96 aa)
cul4bcullin-4B; Belongs to the cullin family. (867 aa)
cul4acullin-4A; Belongs to the cullin family. (769 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit. (783 aa)
LOC106513356Ubiquitin-like. (85 aa)
xpcDNA repair protein complementing XP-C cells. (962 aa)
LOC106512962E3 SUMO-protein ligase PIAS1-like isoform X1. (698 aa)
LOC106512465chromodomain-helicase-DNA-binding protein 1-like. (993 aa)
LOC106511409Poly [ADP-ribose] polymerase. (395 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
rps27aubiquitin-40S ribosomal protein S27a. (156 aa)
LOC106532020Uncharacterized protein LOC106532020. (907 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
LOC106532945Uncharacterized protein LOC106532945. (761 aa)
LOC106533213Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (601 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ddb2DNA damage-binding protein 2. (460 aa)
LOC106535087Bromodomain-containing protein 4-like. (702 aa)
LOC106535088Nucleophosmin-like. (233 aa)
nfatc2ipNFATC2-interacting protein. (327 aa)
ercc4DNA repair endonuclease XPF. (894 aa)
LOC106535939UV excision repair protein RAD23 homolog B-like. (381 aa)
LOC106536601chromodomain-helicase-DNA-binding protein 1-like. (85 aa)
LOC106536602chromodomain-helicase-DNA-binding protein 1-like. (661 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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