STRINGSTRING
cul4a cul4a cops4 cops4 LOC106537185 LOC106537185 ccnh ccnh ercc5 ercc5 LOC106536681 LOC106536681 LOC106536602 LOC106536602 LOC106536601 LOC106536601 LOC106536580 LOC106536580 LOC106536419 LOC106536419 polr2c polr2c LOC106535939 LOC106535939 ercc4 ercc4 cops2 cops2 nfatc2ip nfatc2ip rfc1 rfc1 LOC106535359 LOC106535359 LOC106535353 LOC106535353 LOC106535136 LOC106535136 LOC106535088 LOC106535088 LOC106535087 LOC106535087 mcrs1 mcrs1 ddb2 ddb2 cdk7 cdk7 ino80d ino80d usp7 usp7 pole3 pole3 znf830 znf830 polr2b polr2b ube2v2 ube2v2 LOC106533313 LOC106533313 LOC106533213 LOC106533213 rfc2 rfc2 LOC106533076 LOC106533076 LOC106532945 LOC106532945 pold4 pold4 polk polk LOC106532634 LOC106532634 polr2e polr2e mnat1 mnat1 LOC106532059 LOC106532059 LOC106532020 LOC106532020 LOC106531760 LOC106531760 LOC106531751 LOC106531751 polr2j polr2j rnf111 rnf111 LOC106531475 LOC106531475 sumo1 sumo1 rpap3 rpap3 gtf2h4 gtf2h4 uvssa uvssa polr2l polr2l ino80b ino80b hmgn1 hmgn1 xrcc1 xrcc1 xab2 xab2 LOC106529278 LOC106529278 LOC106529189 LOC106529189 vwa5b2 vwa5b2 LOC106528505 LOC106528505 xpa xpa pold1 pold1 bivm bivm cops3 cops3 ino80c ino80c rpa2 rpa2 parp1 parp1 ercc1 ercc1 pole2 pole2 usp45 usp45 LOC106525898 LOC106525898 tceanc tceanc cops6 cops6 polr2a polr2a gps1 gps1 meiob meiob rpa3 rpa3 ddb1 ddb1 tcea1 tcea1 LOC106524470 LOC106524470 ercc6 ercc6 cops8 cops8 LOC106523888 LOC106523888 gtf2h3 gtf2h3 LOC106523505 LOC106523505 LOC106523318 LOC106523318 pold3 pold3 ercc2 ercc2 polr2i polr2i atad5 atad5 sumo2 sumo2 LOC106521991 LOC106521991 LOC106521775 LOC106521775 pole pole pole4 pole4 LOC106521574 LOC106521574 LOC106521404 LOC106521404 LOC106521199 LOC106521199 gtf2h1 gtf2h1 cops7a cops7a ino80e ino80e LOC106520903 LOC106520903 lig1 lig1 parp2 parp2 polr2f polr2f rbx1 rbx1 LOC106520637 LOC106520637 ube2i ube2i ep300 ep300 rcbtb2 rcbtb2 tfpt tfpt kxd1 kxd1 LOC106519625 LOC106519625 rfc5 rfc5 phf3 phf3 ppie ppie uba52 uba52 wdr76 wdr76 LOC106518873 LOC106518873 LOC106518596 LOC106518596 LOC106518458 LOC106518458 usp40 usp40 aqr aqr polr2k polr2k ruvbl1 ruvbl1 parp3 parp3 LOC106517805 LOC106517805 LOC106517370 LOC106517370 rfc4 rfc4 prpf19 prpf19 tceanc2 tceanc2 pold2 pold2 polr2g polr2g LOC106515610 LOC106515610 LOC106515271 LOC106515271 LOC106515255 LOC106515255 cul4b cul4b lig3 lig3 rfc3 rfc3 nfrkb nfrkb ercc3 ercc3 ercc8 ercc8 pcna pcna ppp1r42 ppp1r42 cops5 cops5 LOC106513356 LOC106513356 actr8 actr8 xpc xpc actr5 actr5 LOC106512962 LOC106512962 LOC106512772 LOC106512772 LOC106512465 LOC106512465 LOC106511433 LOC106511433 LOC106511409 LOC106511409 LOC106511288 LOC106511288 nrde2 nrde2 gtf2h5 gtf2h5 LOC106510918 LOC106510918 rps27a rps27a polr2h polr2h
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cul4acullin-4A; Belongs to the cullin family. (769 aa)
cops4COP9 signalosome complex subunit 4. (430 aa)
LOC106537185Transcriptional repressor protein YY1-like isoform X1. (378 aa)
ccnhcyclin-H; Belongs to the cyclin family. (319 aa)
ercc5DNA repair protein complementing XP-G cells. (1067 aa)
LOC106536681Ubiquitin-conjugating enzyme E2 variant 1-like. (170 aa)
LOC106536602chromodomain-helicase-DNA-binding protein 1-like. (661 aa)
LOC106536601chromodomain-helicase-DNA-binding protein 1-like. (85 aa)
LOC106536580RCC1 and BTB domain-containing protein 1-like. (531 aa)
LOC106536419LOW QUALITY PROTEIN: DNA helicase INO80-like isoform X1. (1563 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3. (275 aa)
LOC106535939UV excision repair protein RAD23 homolog B-like. (381 aa)
ercc4DNA repair endonuclease XPF. (894 aa)
cops2COP9 signalosome complex subunit 2. (443 aa)
nfatc2ipNFATC2-interacting protein. (327 aa)
rfc1Replication factor C subunit 1. (1170 aa)
LOC106535359Uncharacterized protein LOC106535359 isoform X1. (470 aa)
LOC106535353Actin, cytoplasmic 1. (375 aa)
LOC106535136Ubiquitin carboxyl-terminal hydrolase 40-like. (906 aa)
LOC106535088Nucleophosmin-like. (233 aa)
LOC106535087Bromodomain-containing protein 4-like. (702 aa)
mcrs1Microspherule protein 1. (466 aa)
ddb2DNA damage-binding protein 2. (460 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ino80dINO80 complex subunit D. (1001 aa)
usp7Ubiquitin carboxyl-terminal hydrolase 7 isoform X1; Belongs to the peptidase C19 family. (1103 aa)
pole3DNA polymerase epsilon subunit 3. (150 aa)
znf830Zinc finger protein 830. (339 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
LOC106533313DNA-directed RNA polymerase II subunit RPB1-like. (290 aa)
LOC106533213Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (601 aa)
rfc2Replication factor C subunit 2. (346 aa)
LOC106533076UV-stimulated scaffold protein A-like. (476 aa)
LOC106532945Uncharacterized protein LOC106532945. (761 aa)
pold4DNA polymerase delta subunit 4. (112 aa)
polkDNA polymerase kappa. (877 aa)
LOC106532634DNA-directed RNA polymerase II subunit RPB4. (143 aa)
polr2eDNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
LOC106532059DNA-directed RNA polymerase II subunit RPB2-like. (367 aa)
LOC106532020Uncharacterized protein LOC106532020. (907 aa)
LOC106531760General transcription factor IIH subunit. (392 aa)
LOC106531751pre-mRNA-splicing factor ISY1 homolog. (283 aa)
polr2jDNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
rnf111LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Arkadia. (1015 aa)
LOC106531475Actin, cytoplasmic 1-like. (375 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
rpap3RNA polymerase II-associated protein 3. (636 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (465 aa)
uvssaUV-stimulated scaffold protein A. (720 aa)
polr2lDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
ino80bINO80 complex subunit B isoform X1. (335 aa)
hmgn1Non-histone chromosomal protein HMG-14. (89 aa)
xrcc1DNA repair protein XRCC1. (624 aa)
xab2pre-mRNA-splicing factor SYF1. (847 aa)
LOC106529278RCC1 and BTB domain-containing protein 1-like isoform X1. (615 aa)
LOC106529189Uncharacterized protein LOC106529189. (981 aa)
vwa5b2Von Willebrand factor A domain-containing protein 5B2. (1385 aa)
LOC106528505Transcription elongation factor A protein 2-like. (305 aa)
xpaDNA repair protein complementing XP-A cells. (270 aa)
pold1DNA polymerase. (1105 aa)
bivmBasic immunoglobulin-like variable motif-containing protein isoform X1. (506 aa)
cops3COP9 signalosome complex subunit 3. (423 aa)
ino80cINO80 complex subunit C. (205 aa)
rpa2Replication protein A 32 kDa subunit. (272 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1000 aa)
ercc1DNA excision repair protein ERCC-1. (354 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (808 aa)
LOC106525898Caltractin-like. (212 aa)
tceancTranscription elongation factor A N-terminal and central domain-containing protein. (316 aa)
cops6COP9 signalosome complex subunit 6. (316 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1910 aa)
gps1COP9 signalosome complex subunit 1. (487 aa)
meiobMeiosis-specific with OB domain-containing protein. (463 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
tcea1Transcription elongation factor A protein 1 isoform X1. (311 aa)
LOC106524470Histone acetyltransferase p300-like. (1450 aa)
ercc6DNA excision repair protein ERCC-6. (1438 aa)
cops8COP9 signalosome complex subunit 8. (191 aa)
LOC106523888Flocculation protein FLO11-like. (327 aa)
gtf2h3General transcription factor IIH subunit 3 isoform X1. (300 aa)
LOC106523505Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (665 aa)
LOC106523318Small ubiquitin-related modifier. (94 aa)
pold3DNA polymerase delta subunit 3. (437 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (782 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
atad5ATPase family AAA domain-containing protein 5 isoform X1. (1774 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
LOC106521991BTB/POZ domain-containing protein KCTD5-like. (265 aa)
LOC106521775Ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2287 aa)
pole4DNA polymerase epsilon subunit 4 isoform X1. (128 aa)
LOC106521574C-C motif chemokine 20-like. (122 aa)
LOC106521404Transcriptional repressor protein YY1-like. (346 aa)
LOC106521199E3 SUMO-protein ligase PIAS1-like isoform X1. (679 aa)
gtf2h1General transcription factor IIH subunit 1. (550 aa)
cops7aCOP9 signalosome complex subunit 7a. (268 aa)
ino80eINO80 complex subunit E isoform X1. (252 aa)
LOC106520903Serine/arginine repetitive matrix protein 1-like. (1044 aa)
lig1DNA ligase. (1013 aa)
parp2Poly [ADP-ribose] polymerase. (648 aa)
polr2fDNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
rbx1E3 ubiquitin-protein ligase RBX1. (108 aa)
LOC106520637Uncharacterized protein LOC106520637. (870 aa)
ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ep300Histone acetyltransferase p300. (2746 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (527 aa)
tfptTCF3 fusion partner. (195 aa)
kxd1kxDL motif-containing protein 1. (181 aa)
LOC106519625Actin, cytoplasmic 2. (375 aa)
rfc5Replication factor C subunit 5. (335 aa)
phf3LOW QUALITY PROTEIN: PHD finger protein 3 isoform X1. (1630 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
uba52ubiquitin-60S ribosomal protein L40. (128 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (545 aa)
LOC106518873Ubiquitin-like. (76 aa)
LOC106518596DNA helicase INO80-like. (1562 aa)
LOC106518458Small ubiquitin-related modifier. (94 aa)
usp40Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family. (1254 aa)
aqrIntron-binding protein aquarius isoform X1. (1468 aa)
polr2kDNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
parp3Poly [ADP-ribose] polymerase. (583 aa)
LOC106517805UV excision repair protein RAD23 homolog A-like. (365 aa)
LOC106517370SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
rfc4Replication factor C subunit 4. (356 aa)
prpf19pre-mRNA-processing factor 19. (505 aa)
tceanc2Transcription elongation factor A N-terminal and central domain-containing protein 2. (207 aa)
pold2DNA polymerase delta subunit 2. (471 aa)
polr2gDNA-directed RNA polymerase II subunit RPB7. (172 aa)
LOC106515610Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
LOC106515271Small ubiquitin-related modifier. (96 aa)
LOC106515255ATPase family AAA domain-containing protein 5-like. (951 aa)
cul4bcullin-4B; Belongs to the cullin family. (867 aa)
lig3DNA ligase. (1012 aa)
rfc3Replication factor C subunit 3. (356 aa)
nfrkbNuclear factor related to kappa-B-binding protein isoform X1. (1277 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit. (783 aa)
ercc8DNA excision repair protein ERCC-8 isoform X1. (401 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ppp1r42Protein phosphatase 1 regulatory subunit 42. (313 aa)
cops5COP9 signalosome complex subunit 5. (334 aa)
LOC106513356Ubiquitin-like. (85 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (648 aa)
xpcDNA repair protein complementing XP-C cells. (962 aa)
actr5Actin-related protein 5; Belongs to the actin family. (623 aa)
LOC106512962E3 SUMO-protein ligase PIAS1-like isoform X1. (698 aa)
LOC106512772DNA-directed RNA polymerase II subunit RPB4-like. (139 aa)
LOC106512465chromodomain-helicase-DNA-binding protein 1-like. (993 aa)
LOC106511433Serine/arginine repetitive matrix protein 1-like. (768 aa)
LOC106511409Poly [ADP-ribose] polymerase. (395 aa)
LOC106511288Histone acetyltransferase p300-like. (2265 aa)
nrde2Protein NRDE2 homolog. (1179 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
LOC106510918mucin-5AC-like isoform X1. (860 aa)
rps27aubiquitin-40S ribosomal protein S27a. (156 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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