STRINGSTRING
rps27a rps27a LOC106510918 LOC106510918 gtf2h5 gtf2h5 LOC106511409 LOC106511409 LOC106512465 LOC106512465 LOC106512962 LOC106512962 actr5 actr5 xpc xpc actr8 actr8 LOC106513356 LOC106513356 cops5 cops5 pcna pcna ercc3 ercc3 cul4a cul4a nfrkb nfrkb rfc3 rfc3 cul4b cul4b LOC106515255 LOC106515255 LOC106515271 LOC106515271 LOC106515610 LOC106515610 pold2 pold2 rfc4 rfc4 LOC106517370 LOC106517370 LOC106517805 LOC106517805 parp3 parp3 ruvbl1 ruvbl1 LOC106518458 LOC106518458 LOC106518596 LOC106518596 LOC106518873 LOC106518873 wdr76 wdr76 uba52 uba52 rfc5 rfc5 LOC106519625 LOC106519625 kxd1 kxd1 tfpt tfpt rcbtb2 rcbtb2 ube2i ube2i LOC106520637 LOC106520637 rbx1 rbx1 parp2 parp2 LOC106520903 LOC106520903 ino80e ino80e cops7a cops7a gtf2h1 gtf2h1 LOC106521199 LOC106521199 LOC106521404 LOC106521404 LOC106521574 LOC106521574 pole4 pole4 pole pole LOC106521775 LOC106521775 LOC106521991 LOC106521991 sumo2 sumo2 atad5 atad5 ercc2 ercc2 pold3 pold3 rfc1 rfc1 LOC106523318 LOC106523318 LOC106523505 LOC106523505 gtf2h3 gtf2h3 cops8 cops8 ddb1 ddb1 rpa3 rpa3 meiob meiob gps1 gps1 cops6 cops6 nfatc2ip nfatc2ip LOC106525898 LOC106525898 usp45 usp45 pole2 pole2 ercc1 ercc1 parp1 parp1 rpa2 rpa2 ino80c ino80c cops3 cops3 bivm bivm pold1 pold1 xpa xpa vwa5b2 vwa5b2 LOC106529189 LOC106529189 LOC106529278 LOC106529278 ino80b ino80b gtf2h4 gtf2h4 rpap3 rpap3 sumo1 sumo1 LOC106531475 LOC106531475 rnf111 rnf111 LOC106531760 LOC106531760 LOC106532020 LOC106532020 mnat1 mnat1 polk polk pold4 pold4 LOC106532945 LOC106532945 rfc2 rfc2 LOC106533213 LOC106533213 ube2v2 ube2v2 pole3 pole3 ino80d ino80d cdk7 cdk7 ddb2 ddb2 mcrs1 mcrs1 LOC106535087 LOC106535087 LOC106535088 LOC106535088 LOC106535353 LOC106535353 LOC106535359 LOC106535359 cops2 cops2 ercc4 ercc4 LOC106535939 LOC106535939 LOC106536419 LOC106536419 LOC106536580 LOC106536580 LOC106536601 LOC106536601 LOC106536602 LOC106536602 LOC106536681 LOC106536681 ercc5 ercc5 ccnh ccnh LOC106537185 LOC106537185 cops4 cops4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps27aubiquitin-40S ribosomal protein S27a. (156 aa)
LOC106510918mucin-5AC-like isoform X1. (860 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
LOC106511409Poly [ADP-ribose] polymerase. (395 aa)
LOC106512465chromodomain-helicase-DNA-binding protein 1-like. (993 aa)
LOC106512962E3 SUMO-protein ligase PIAS1-like isoform X1. (698 aa)
actr5Actin-related protein 5; Belongs to the actin family. (623 aa)
xpcDNA repair protein complementing XP-C cells. (962 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (648 aa)
LOC106513356Ubiquitin-like. (85 aa)
cops5COP9 signalosome complex subunit 5. (334 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit. (783 aa)
cul4acullin-4A; Belongs to the cullin family. (769 aa)
nfrkbNuclear factor related to kappa-B-binding protein isoform X1. (1277 aa)
rfc3Replication factor C subunit 3. (356 aa)
cul4bcullin-4B; Belongs to the cullin family. (867 aa)
LOC106515255ATPase family AAA domain-containing protein 5-like. (951 aa)
LOC106515271Small ubiquitin-related modifier. (96 aa)
LOC106515610Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
pold2DNA polymerase delta subunit 2. (471 aa)
rfc4Replication factor C subunit 4. (356 aa)
LOC106517370SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family. (138 aa)
LOC106517805UV excision repair protein RAD23 homolog A-like. (365 aa)
parp3Poly [ADP-ribose] polymerase. (583 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
LOC106518458Small ubiquitin-related modifier. (94 aa)
LOC106518596DNA helicase INO80-like. (1562 aa)
LOC106518873Ubiquitin-like. (76 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (545 aa)
uba52ubiquitin-60S ribosomal protein L40. (128 aa)
rfc5Replication factor C subunit 5. (335 aa)
LOC106519625Actin, cytoplasmic 2. (375 aa)
kxd1kxDL motif-containing protein 1. (181 aa)
tfptTCF3 fusion partner. (195 aa)
rcbtb2RCC1 and BTB domain-containing protein 2. (527 aa)
ube2iSUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC106520637Uncharacterized protein LOC106520637. (870 aa)
rbx1E3 ubiquitin-protein ligase RBX1. (108 aa)
parp2Poly [ADP-ribose] polymerase. (648 aa)
LOC106520903Serine/arginine repetitive matrix protein 1-like. (1044 aa)
ino80eINO80 complex subunit E isoform X1. (252 aa)
cops7aCOP9 signalosome complex subunit 7a. (268 aa)
gtf2h1General transcription factor IIH subunit 1. (550 aa)
LOC106521199E3 SUMO-protein ligase PIAS1-like isoform X1. (679 aa)
LOC106521404Transcriptional repressor protein YY1-like. (346 aa)
LOC106521574C-C motif chemokine 20-like. (122 aa)
pole4DNA polymerase epsilon subunit 4 isoform X1. (128 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2287 aa)
LOC106521775Ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
LOC106521991BTB/POZ domain-containing protein KCTD5-like. (265 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
atad5ATPase family AAA domain-containing protein 5 isoform X1. (1774 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit isoform X1. (782 aa)
pold3DNA polymerase delta subunit 3. (437 aa)
rfc1Replication factor C subunit 1. (1170 aa)
LOC106523318Small ubiquitin-related modifier. (94 aa)
LOC106523505Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (665 aa)
gtf2h3General transcription factor IIH subunit 3 isoform X1. (300 aa)
cops8COP9 signalosome complex subunit 8. (191 aa)
ddb1DNA damage-binding protein 1. (1140 aa)
rpa3Replication protein A 14 kDa subunit. (122 aa)
meiobMeiosis-specific with OB domain-containing protein. (463 aa)
gps1COP9 signalosome complex subunit 1. (487 aa)
cops6COP9 signalosome complex subunit 6. (316 aa)
nfatc2ipNFATC2-interacting protein. (327 aa)
LOC106525898Caltractin-like. (212 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (808 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
ercc1DNA excision repair protein ERCC-1. (354 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1000 aa)
rpa2Replication protein A 32 kDa subunit. (272 aa)
ino80cINO80 complex subunit C. (205 aa)
cops3COP9 signalosome complex subunit 3. (423 aa)
bivmBasic immunoglobulin-like variable motif-containing protein isoform X1. (506 aa)
pold1DNA polymerase. (1105 aa)
xpaDNA repair protein complementing XP-A cells. (270 aa)
vwa5b2Von Willebrand factor A domain-containing protein 5B2. (1385 aa)
LOC106529189Uncharacterized protein LOC106529189. (981 aa)
LOC106529278RCC1 and BTB domain-containing protein 1-like isoform X1. (615 aa)
ino80bINO80 complex subunit B isoform X1. (335 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (465 aa)
rpap3RNA polymerase II-associated protein 3. (636 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
LOC106531475Actin, cytoplasmic 1-like. (375 aa)
rnf111LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Arkadia. (1015 aa)
LOC106531760General transcription factor IIH subunit. (392 aa)
LOC106532020Uncharacterized protein LOC106532020. (907 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
polkDNA polymerase kappa. (877 aa)
pold4DNA polymerase delta subunit 4. (112 aa)
LOC106532945Uncharacterized protein LOC106532945. (761 aa)
rfc2Replication factor C subunit 2. (346 aa)
LOC106533213Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (601 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
pole3DNA polymerase epsilon subunit 3. (150 aa)
ino80dINO80 complex subunit D. (1001 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ddb2DNA damage-binding protein 2. (460 aa)
mcrs1Microspherule protein 1. (466 aa)
LOC106535087Bromodomain-containing protein 4-like. (702 aa)
LOC106535088Nucleophosmin-like. (233 aa)
LOC106535353Actin, cytoplasmic 1. (375 aa)
LOC106535359Uncharacterized protein LOC106535359 isoform X1. (470 aa)
cops2COP9 signalosome complex subunit 2. (443 aa)
ercc4DNA repair endonuclease XPF. (894 aa)
LOC106535939UV excision repair protein RAD23 homolog B-like. (381 aa)
LOC106536419LOW QUALITY PROTEIN: DNA helicase INO80-like isoform X1. (1563 aa)
LOC106536580RCC1 and BTB domain-containing protein 1-like. (531 aa)
LOC106536601chromodomain-helicase-DNA-binding protein 1-like. (85 aa)
LOC106536602chromodomain-helicase-DNA-binding protein 1-like. (661 aa)
LOC106536681Ubiquitin-conjugating enzyme E2 variant 1-like. (170 aa)
ercc5DNA repair protein complementing XP-G cells. (1067 aa)
ccnhcyclin-H; Belongs to the cyclin family. (319 aa)
LOC106537185Transcriptional repressor protein YY1-like isoform X1. (378 aa)
cops4COP9 signalosome complex subunit 4. (430 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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