STRINGSTRING
rpl7a rpl7a rpl28 rpl28 rpl37 rpl37 rpl30 rpl30 ppp2r1b ppp2r1b LOC106515434 LOC106515434 rps24 rps24 rpl34 rpl34 rpl29 rpl29 rpl39 rpl39 upf3b upf3b rpl23a rpl23a LOC106514001 LOC106514001 rnpepl1 rnpepl1 LOC106537382 LOC106537382 LOC106537146 LOC106537146 rps15 rps15 arl6ip1 arl6ip1 LOC106536363 LOC106536363 rpl9 rpl9 LOC106534504 LOC106534504 rpl12 rpl12 rpl22l1 rpl22l1 rps20 rps20 LOC106533289 LOC106533289 rpl15 rpl15 rps14 rps14 rpl18a rpl18a rpl17 rpl17 LOC106532746 LOC106532746 LOC106513562 LOC106513562 rpl7 rpl7 rpl21 rpl21 LOC106513356 LOC106513356 dcp1a dcp1a LOC106512994 LOC106512994 LOC106511510 LOC106511510 LOC106511333 LOC106511333 eif4a3 eif4a3 rps27a rps27a rpl35a rpl35a gspt1 gspt1 upf1 upf1 rpl8 rpl8 LOC106531571 LOC106531571 smg7 smg7 ncbp1 ncbp1 rpl13 rpl13 rps28 rps28 rpl27a rpl27a smg8 smg8 LOC106530376 LOC106530376 rpl23 rpl23 rpl5 rpl5 rsad1 rsad1 rps3 rps3 LOC106529451 LOC106529451 smg1 smg1 magoh magoh rpl31 rpl31 rpl11 rpl11 rps18 rps18 rps11 rps11 rbm8a rbm8a smg5 smg5 casc3 casc3 LOC106527967 LOC106527967 rps7 rps7 LOC106527632 LOC106527632 rpl7l1 rpl7l1 LOC106526859 LOC106526859 rps3a rps3a rps21 rps21 rps23 rps23 rps12 rps12 upf3a upf3a rpl27 rpl27 rpl14 rpl14 rps15a rps15a rps4x rps4x ncbp2 ncbp2 rpl24 rpl24 LOC106523754 LOC106523754 smg6 smg6 rpl32 rpl32 smg9 smg9 LOC106523099 LOC106523099 LOC106523055 LOC106523055 rpl10 rpl10 rpl22 rpl22 rps13 rps13 rps25 rps25 rpl13a rpl13a rps2 rps2 LOC106522039 LOC106522039 LOC106521912 LOC106521912 LOC106521910 LOC106521910 LOC106521571 LOC106521571 rps16 rps16 rpl4 rpl4 LOC106520876 LOC106520876 rps5 rps5 pih1d3 pih1d3 rps8 rps8 rpl18 rpl18 rps9 rps9 kxd1 kxd1 LOC106520125 LOC106520125 rpl6 rpl6 pabpc4 pabpc4 LOC106518874 LOC106518874 rnps1 rnps1 rpl35 rpl35 rps29 rps29 rplp0 rplp0 rps10 rps10 pabpc1 pabpc1 rplp1 rplp1 rps26 rps26 rpl37a rpl37a rpsa rpsa LOC106517678 LOC106517678 rpl36 rpl36 rps6 rps6 etf1 etf1 LOC106516986 LOC106516986
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl7a60S ribosomal protein L7a. (266 aa)
rpl2860S ribosomal protein L28. (137 aa)
rpl37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
rpl3060S ribosomal protein L30. (116 aa)
ppp2r1bSerine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform. (589 aa)
LOC106515434serine/Arginine-related protein 53-like isoform X1. (157 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
rpl3460S ribosomal protein L34. (123 aa)
rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
rpl3960S ribosomal protein L39. (75 aa)
upf3bRegulator of nonsense transcripts 3B isoform X1. (454 aa)
rpl23a60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
LOC10651400160S ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family. (146 aa)
rnpepl1Arginyl aminopeptidase-like 1. (707 aa)
LOC106537382Proline-rich nuclear receptor coactivator 1-like. (262 aa)
LOC10653714640S ribosomal protein S19-like. (152 aa)
rps1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
arl6ip1ADP-ribosylation factor-like protein 6-interacting protein 1. (203 aa)
LOC106536363Regulator of nonsense transcripts 2-like. (1304 aa)
rpl960S ribosomal protein L9 isoform X1. (193 aa)
LOC106534504Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
rpl1260S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
rpl22l160S ribosomal protein L22-like 1. (129 aa)
rps2040S ribosomal protein S20 isoform X1. (119 aa)
LOC106533289UPF0544 protein C5orf45 homolog isoform X1. (225 aa)
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
rps1440S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
rpl1760S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
LOC106532746Regulator of nonsense transcripts 2-like isoform X1. (852 aa)
LOC106513562Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
rpl760S ribosomal protein L7. (245 aa)
rpl2160S ribosomal protein L21. (160 aa)
LOC106513356Ubiquitin-like. (85 aa)
dcp1amRNA-decapping enzyme 1A. (490 aa)
LOC10651299440S ribosomal protein S17-like. (134 aa)
LOC10651151040S ribosomal protein S14-like. (87 aa)
LOC10651133360S ribosomal protein L22. (130 aa)
eif4a3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (406 aa)
rps27aubiquitin-40S ribosomal protein S27a. (156 aa)
rpl35a60S ribosomal protein L35a. (110 aa)
gspt1Eukaryotic peptide chain release factor GTP-binding subunit ERF3A. (587 aa)
upf1Regulator of nonsense transcripts 1 isoform X1. (1102 aa)
rpl860S ribosomal protein L8. (257 aa)
LOC10653157140S ribosomal protein S27. (84 aa)
smg7Protein SMG7. (1153 aa)
ncbp1Nuclear cap-binding protein subunit 1. (795 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
rps2840S ribosomal protein S28. (69 aa)
rpl27a60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
smg8Protein SMG8. (920 aa)
LOC10653037660S acidic ribosomal protein P2-like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (116 aa)
rpl2360S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
rpl560S ribosomal protein L5. (304 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (461 aa)
rps340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (245 aa)
LOC106529451Eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like isoform X1. (576 aa)
smg1Serine/threonine-protein kinase SMG1 isoform X1; Belongs to the PI3/PI4-kinase family. (3656 aa)
magohProtein mago nashi homolog. (147 aa)
rpl3160S ribosomal protein L31. (124 aa)
rpl1160S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
rps1840S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
rps1140S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (186 aa)
smg5Protein SMG5. (1125 aa)
casc3Protein CASC3. (764 aa)
LOC10652796740S ribosomal protein S17. (139 aa)
rps740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
LOC106527632Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
rpl7l160S ribosomal protein L7-like 1. (246 aa)
LOC106526859Uncharacterized protein LOC106526859. (1216 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
rps2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
rps2340S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
upf3aRegulator of nonsense transcripts 3A isoform X1. (477 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
rpl1460S ribosomal protein L14. (140 aa)
rps15a40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rps4x40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
rpl2460S ribosomal protein L24. (157 aa)
LOC10652375440S ribosomal protein S19. (176 aa)
smg6Telomerase-binding protein EST1A. (1728 aa)
rpl3260S ribosomal protein L32. (135 aa)
smg9Protein SMG9. (507 aa)
LOC106523099Embryonic polyadenylate-binding protein B-like isoform X1. (659 aa)
LOC106523055Proline-rich nuclear receptor coactivator 2-like. (155 aa)
rpl1060S ribosomal protein L10. (215 aa)
rpl2260S ribosomal protein L22. (131 aa)
rps1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
rpl13a60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
rps240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (280 aa)
LOC10652203960S ribosomal protein L5. (297 aa)
LOC10652191260S ribosomal protein L26. (145 aa)
LOC106521910Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
LOC10652157140S ribosomal protein S27-like. (84 aa)
rps1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
rpl460S ribosomal protein L4. (369 aa)
LOC10652087640S ribosomal protein S27. (84 aa)
rps540S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
pih1d3Protein PIH1D3 isoform X1. (194 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
rpl1860S ribosomal protein L18. (240 aa)
rps940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
kxd1kxDL motif-containing protein 1. (181 aa)
LOC106520125Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
rpl660S ribosomal protein L6. (259 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (625 aa)
LOC10651887460S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
rnps1RNA-binding protein with serine-rich domain 1 isoform X1. (320 aa)
rpl3560S ribosomal protein L35. (123 aa)
rps2940S ribosomal protein S29. (56 aa)
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
rps1040S ribosomal protein S10. (166 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (631 aa)
rplp160S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (129 aa)
rpl37a60S ribosomal protein L37a. (97 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (307 aa)
LOC10651767860S acidic ribosomal protein P2-like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (116 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
etf1Eukaryotic peptide chain release factor subunit 1. (443 aa)
LOC106516986Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (195 aa)
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
Server load: low (40%) [HD]