(13 nodes) Synaptobrevin network (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106512467	Vesicle-associated membrane protein 4-like. (141 aa)
	LOC106529171	Synaptobrevin-like. (125 aa)
	LOC106519597	Vesicle-associated membrane protein 2-like. (119 aa)
	vamp4	Vesicle-associated membrane protein 4. (404 aa)
	LOC106532968	Vesicle-associated membrane protein 8-like isoform X1. (105 aa)
	vamp8	Vesicle-associated membrane protein 8. (122 aa)
	vamp7	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (220 aa)
	LOC106523110	Vesicle-associated membrane protein 2. (111 aa)
	LOC106522101	Vesicle-associated membrane protein 5-like. (95 aa)
	LOC106522035	Vesicle-associated membrane protein 8-like isoform X1. (117 aa)
	ykt6	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family. (198 aa)
	vamp3	Vesicle-associated membrane protein 3. (102 aa)
	sec22b	Vesicle-trafficking protein SEC22b isoform X1; Belongs to the synaptobrevin family. (219 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106512467	LOC106519597	A0A2I4AM29	A0A2I4BGC4	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 2-like.	0.672
LOC106512467	LOC106522035	A0A2I4AM29	A0A2I4BRF1	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 8-like isoform X1.	0.481
LOC106512467	LOC106523110	A0A2I4AM29	A0A2I4BVU7	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 2.	0.672
LOC106512467	LOC106529171	A0A2I4AM29	A0A2I4CJ11	Vesicle-associated membrane protein 4-like.	Synaptobrevin-like.	0.672
LOC106512467	vamp3	A0A2I4AM29	A0A2I4APX3	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 3.	0.547
LOC106512467	vamp7	A0A2I4AM29	A0A2I4CIN9	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.663
LOC106512467	vamp8	A0A2I4AM29	A0A2I4CUU8	Vesicle-associated membrane protein 4-like.	Vesicle-associated membrane protein 8.	0.481
LOC106512467	ykt6	A0A2I4AM29	A0A2I4BHK5	Vesicle-associated membrane protein 4-like.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.534
LOC106519597	LOC106512467	A0A2I4BGC4	A0A2I4AM29	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 4-like.	0.672
LOC106519597	LOC106522035	A0A2I4BGC4	A0A2I4BRF1	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8-like isoform X1.	0.441
LOC106519597	LOC106532968	A0A2I4BGC4	A0A2I4CX84	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8-like isoform X1.	0.679
LOC106519597	vamp3	A0A2I4BGC4	A0A2I4APX3	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 3.	0.759
LOC106519597	vamp4	A0A2I4BGC4	A0A2I4CZF6	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 4.	0.672
LOC106519597	vamp7	A0A2I4BGC4	A0A2I4CIN9	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.598
LOC106519597	vamp8	A0A2I4BGC4	A0A2I4CUU8	Vesicle-associated membrane protein 2-like.	Vesicle-associated membrane protein 8.	0.412
LOC106519597	ykt6	A0A2I4BGC4	A0A2I4BHK5	Vesicle-associated membrane protein 2-like.	Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.	0.530
LOC106522035	LOC106512467	A0A2I4BRF1	A0A2I4AM29	Vesicle-associated membrane protein 8-like isoform X1.	Vesicle-associated membrane protein 4-like.	0.481
LOC106522035	LOC106519597	A0A2I4BRF1	A0A2I4BGC4	Vesicle-associated membrane protein 8-like isoform X1.	Vesicle-associated membrane protein 2-like.	0.441
LOC106522035	LOC106522101	A0A2I4BRF1	A0A2I4BRS3	Vesicle-associated membrane protein 8-like isoform X1.	Vesicle-associated membrane protein 5-like.	0.544
LOC106522035	LOC106523110	A0A2I4BRF1	A0A2I4BVU7	Vesicle-associated membrane protein 8-like isoform X1.	Vesicle-associated membrane protein 2.	0.440