9 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polb	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (338 aa)
	bcl2	Apoptosis regulator Bcl-2 isoform X1. (279 aa)
	LOC106532353	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5486 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)
	LOC106515271	Small ubiquitin-related modifier. (96 aa)
	mdn1	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4587 aa)
	LOC106523318	Small ubiquitin-related modifier. (94 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	LOC106518458	Small ubiquitin-related modifier. (94 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106515271	LOC106532353	A0A2I4AY68	A0A2I4CV25	Small ubiquitin-related modifier.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.501
LOC106515271	mdn1	A0A2I4AY68	A0A2I4CEJ7	Small ubiquitin-related modifier.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.501
LOC106515271	sumo1	A0A2I4AY68	A0A2I4CS05	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.655
LOC106518458	LOC106532353	A0A2I4BBU9	A0A2I4CV25	Small ubiquitin-related modifier.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.501
LOC106518458	mdn1	A0A2I4BBU9	A0A2I4CEJ7	Small ubiquitin-related modifier.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.501
LOC106518458	sumo1	A0A2I4BBU9	A0A2I4CS05	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.655
LOC106523318	LOC106532353	A0A2I4BWR1	A0A2I4CV25	Small ubiquitin-related modifier.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.501
LOC106523318	mdn1	A0A2I4BWR1	A0A2I4CEJ7	Small ubiquitin-related modifier.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.501
LOC106523318	sumo1	A0A2I4BWR1	A0A2I4CS05	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.655
LOC106532353	LOC106515271	A0A2I4CV25	A0A2I4AY68	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.501
LOC106532353	LOC106518458	A0A2I4CV25	A0A2I4BBU9	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.501
LOC106532353	LOC106523318	A0A2I4CV25	A0A2I4BWR1	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.501
LOC106532353	mdn1	A0A2I4CV25	A0A2I4CEJ7	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.900
LOC106532353	sumo1	A0A2I4CV25	A0A2I4CS05	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.441
LOC106532353	sumo2	A0A2I4CV25	A0A2I4BRK8	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.496
mdn1	LOC106515271	A0A2I4CEJ7	A0A2I4AY68	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.501
mdn1	LOC106518458	A0A2I4CEJ7	A0A2I4BBU9	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.501
mdn1	LOC106523318	A0A2I4CEJ7	A0A2I4BWR1	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.501
mdn1	LOC106532353	A0A2I4CEJ7	A0A2I4CV25	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.900
mdn1	sumo1	A0A2I4CEJ7	A0A2I4CS05	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	Small ubiquitin-related modifier.	0.441