17 items (Austrofundulus limnaeus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106526801	Annexin. (316 aa)
	LOC106510767	Annexin A2-like. (305 aa)
	LOC106511860	Annexin. (235 aa)
	LOC106512028	Annexin. (235 aa)
	anxa2	Annexin. (352 aa)
	anxa4	Annexin. (320 aa)
	LOC106514570	Annexin. (337 aa)
	LOC106515342	Annexin. (513 aa)
	LOC106515547	Annexin. (316 aa)
	anxa6	Annexin. (665 aa)
	LOC106517021	Annexin. (505 aa)
	anxa1	Annexin. (340 aa)
	anxa3	Annexin. (340 aa)
	anxa5	Annexin. (316 aa)
	anxa10	Annexin. (317 aa)
	LOC106527656	Annexin. (347 aa)
	LOC106530007	Annexin. (338 aa)

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106510767	LOC106530007	A0A2I4AHI0	A0A2I4CLZ7	Annexin A2-like.	Annexin.	0.929
LOC106510767	anxa2	A0A2I4AHI0	A0A2I4AU89	Annexin A2-like.	Annexin.	0.930
LOC106530007	LOC106510767	A0A2I4CLZ7	A0A2I4AHI0	Annexin.	Annexin A2-like.	0.929
LOC106530007	anxa2	A0A2I4CLZ7	A0A2I4AU89	Annexin.	Annexin.	0.901
LOC106530007	anxa6	A0A2I4CLZ7	A0A2I4B1H2	Annexin.	Annexin.	0.490
anxa1	anxa6	A0A2I4BIC8	A0A2I4B1H2	Annexin.	Annexin.	0.488
anxa2	LOC106510767	A0A2I4AU89	A0A2I4AHI0	Annexin.	Annexin A2-like.	0.930
anxa2	LOC106530007	A0A2I4AU89	A0A2I4CLZ7	Annexin.	Annexin.	0.901
anxa2	anxa6	A0A2I4AU89	A0A2I4B1H2	Annexin.	Annexin.	0.497
anxa6	LOC106530007	A0A2I4B1H2	A0A2I4CLZ7	Annexin.	Annexin.	0.490
anxa6	anxa1	A0A2I4B1H2	A0A2I4BIC8	Annexin.	Annexin.	0.488
anxa6	anxa2	A0A2I4B1H2	A0A2I4AU89	Annexin.	Annexin.	0.497