(6 nodes) Mixed, incl. XPC complex, and Centriole network (Musa balbisiana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A4S8IMA9	Uncharacterized protein. (170 aa)
	A0A4S8J880	Uncharacterized protein. (445 aa)
	A0A4S8K5W5	Uncharacterized protein. (280 aa)
	A0A4S8K5W6	Uncharacterized protein. (774 aa)
	A0A4V4H5P9	WD_REPEATS_REGION domain-containing protein. (548 aa)
	A0A4V4H780	EF-hand domain-containing protein. (106 aa)

Your Current Organism:

Musa balbisiana

NCBI taxonomy Id: 52838
Other names: Balbis banana, M. balbisiana, Musa BB Group, Musa balbisiana Colla, starchy banana

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S8IMA9	A0A4S8J880	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A4S8IMA9	A0A4S8K5W5	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A4S8IMA9	A0A4S8K5W6	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A4S8IMA9	A0A4V4H5P9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.815
A0A4S8J880	A0A4S8IMA9	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A4S8J880	A0A4S8K5W5	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A4S8J880	A0A4S8K5W6	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A4S8J880	A0A4V4H5P9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.827
A0A4S8J880	A0A4V4H780	Uncharacterized protein.	EF-hand domain-containing protein.	0.774
A0A4S8K5W5	A0A4S8IMA9	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A4S8K5W5	A0A4S8J880	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A4S8K5W5	A0A4S8K5W6	Uncharacterized protein.	Uncharacterized protein.	0.552
A0A4S8K5W5	A0A4V4H5P9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.967
A0A4S8K5W5	A0A4V4H780	Uncharacterized protein.	EF-hand domain-containing protein.	0.944
A0A4S8K5W6	A0A4S8IMA9	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A4S8K5W6	A0A4S8J880	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A4S8K5W6	A0A4S8K5W5	Uncharacterized protein.	Uncharacterized protein.	0.552
A0A4S8K5W6	A0A4V4H5P9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.967
A0A4S8K5W6	A0A4V4H780	Uncharacterized protein.	EF-hand domain-containing protein.	0.944
A0A4V4H5P9	A0A4S8IMA9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.815