STRINGSTRING
BN2166_0008540 BN2166_0008540 BN2166_0022700 BN2166_0022700 BN2166_0018180 BN2166_0018180 BN2166_0020680 BN2166_0020680 BN2166_0022210 BN2166_0022210 BN2166_0066300 BN2166_0066300 BN2166_0075020 BN2166_0075020
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0008540FGENESH: predicted gene_2.23 protein. (1833 aa)
BN2166_0022700annotation not available (492 aa)
BN2166_0018180BY PROTMAP: gi|342319870|gb|EGU11815.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1372 aa)
BN2166_0020680FGENESH: predicted gene_3.519 protein. (1459 aa)
BN2166_0022210FGENESH: predicted gene_3.672 protein. (781 aa)
BN2166_0066300annotation not available (1334 aa)
BN2166_0075020FGENESH: predicted gene_24.1 protein. (390 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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