STRINGSTRING
BN2166_0007280 BN2166_0007280 BN2166_0054080 BN2166_0054080 BN2166_0010090 BN2166_0010090 BN2166_0015510 BN2166_0015510 BN2166_0031800 BN2166_0031800 BN2166_0008270 BN2166_0008270 BN2166_0015170 BN2166_0015170 BN2166_0018570 BN2166_0018570 BN2166_0034680 BN2166_0034680 BN2166_0036360 BN2166_0036360 BN2166_0029020 BN2166_0029020 BN2166_0042310 BN2166_0042310 BN2166_0062750 BN2166_0062750 BN2166_0053580 BN2166_0053580 BN2166_0054430 BN2166_0054430 BN2166_0056930 BN2166_0056930 BN2166_0062070 BN2166_0062070
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0007280Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family. (171 aa)
BN2166_0054080Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
BN2166_0010090Belongs to the ubiquitin-conjugating enzyme family. (111 aa)
BN2166_0015510Belongs to the ubiquitin-conjugating enzyme family. (187 aa)
BN2166_0031800FGENESH: predicted gene_6.102 protein. (271 aa)
BN2166_0008270annotation not available (138 aa)
BN2166_0015170annotation not available (1023 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0034680annotation not available (1141 aa)
BN2166_0036360annotation not available (375 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0062750BY PROTMAP: gi|647402010|emb|CDR48317.1| RHTO0S17e01068g1_1 [Rhodosporidium toruloides]. (298 aa)
BN2166_0053580annotation not available (1358 aa)
BN2166_0054430UBC-like protein. (188 aa)
BN2166_0056930annotation not available (230 aa)
BN2166_0062070Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family. (170 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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