(30 nodes) Small-subunit processome network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0006950	U3 small nucleolar RNA-associated protein 4. (1025 aa)
	BN2166_0009950	Nrap protein-domain containing protein. (1308 aa)
	BN2166_0001760	Uncharacterized protein. (372 aa)
	BN2166_0014890	BY PROTMAP: gi\|647401307\|emb\|CDR47456.1\| RHTO0S14e03884g1_1 [Rhodosporidium toruloides]. (882 aa)
	BN2166_0025850	BY PROTMAP: gi\|814539488\|emb\|CEQ43147.1\| SPOSA6832_05049, partial [Sporidiobolus salmonicolor]. (1045 aa)
	BN2166_0005420	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (394 aa)
	BN2166_0007770	Apoptosis-antagonizing transcription factor, C-terminal-domain containing protein. (519 aa)
	BN2166_0034700	BY PROTMAP: gi\|814543081\|emb\|CEQ39458.1\| SPOSA6832_00967 [Sporidiobolus salmonicolor]. (613 aa)
	BN2166_0027090	U3 small nucleolar ribonucleo protein IMP3. (227 aa)
	BN2166_0010620	Ribosome biogenesis protein Noc4. (647 aa)
	BN2166_0033040	annotation not available (660 aa)
	BN2166_0030530	FGENESH: predicted gene_5.598 protein. (844 aa)
	BN2166_0030010	annotation not available (1507 aa)
	BN2166_0030260	annotation not available (284 aa)
	BN2166_0020120	WD40-repeat-containing domain protein. (916 aa)
	BN2166_0034380	annotation not available (779 aa)
	BN2166_0034360	annotation not available (532 aa)
	BN2166_0050400	FGENESH: predicted gene_9.386 protein. (1175 aa)
	BN2166_0026170	annotation not available (871 aa)
	BN2166_0027870	annotation not available (341 aa)
	BN2166_0044030	WD40-repeat-containing domain protein. (555 aa)
	BN2166_0033370	annotation not available (2125 aa)
	BN2166_0036120	Putative WD-repeat protein. (1012 aa)
	BN2166_0057480	FGENESH: predicted gene_11.244 protein. (891 aa)
	BN2166_0048370	DRIM domain-containing protein. (2568 aa)
	BN2166_0069380	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1103 aa)
	BN2166_0069880	WD_REPEATS_REGION domain-containing protein. (567 aa)
	BN2166_0070930	Putative WD repeat protein. (907 aa)
	BN2166_0062470	U3 small nucleolar RNA-associated protein 10. (2114 aa)
	BN2166_0068570	Sas10 domain-containing protein. (785 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0001760	BN2166_0005420	A0A0K3C795	A0A0K3CC05	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
BN2166_0001760	BN2166_0006950	A0A0K3C795	A0A0K3C5A3	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 4.	0.993
BN2166_0001760	BN2166_0007770	A0A0K3C795	A0A0K3CCM1	Uncharacterized protein.	Apoptosis-antagonizing transcription factor, C-terminal-domain containing protein.	0.994
BN2166_0001760	BN2166_0009950	A0A0K3C795	A0A0K3C608	Uncharacterized protein.	Nrap protein-domain containing protein.	0.950
BN2166_0001760	BN2166_0010620	A0A0K3C795	A0A0K3CDE7	Uncharacterized protein.	Ribosome biogenesis protein Noc4.	0.997
BN2166_0001760	BN2166_0014890	A0A0K3C795	A0A0K3C9T0	Uncharacterized protein.	BY PROTMAP: gi\|647401307\|emb\|CDR47456.1\| RHTO0S14e03884g1_1 [Rhodosporidium toruloides].	0.987
BN2166_0001760	BN2166_0020120	A0A0K3C795	A0A0K3CG26	Uncharacterized protein.	WD40-repeat-containing domain protein.	0.971
BN2166_0001760	BN2166_0025850	A0A0K3C795	A0A0K3CAE3	Uncharacterized protein.	BY PROTMAP: gi\|814539488\|emb\|CEQ43147.1\| SPOSA6832_05049, partial [Sporidiobolus salmonicolor].	0.993
BN2166_0001760	BN2166_0026170	A0A0K3C795	A0A0K3CHR6	Uncharacterized protein.	annotation not available	0.996
BN2166_0001760	BN2166_0027090	A0A0K3C795	A0A0K3CD76	Uncharacterized protein.	U3 small nucleolar ribonucleo protein IMP3.	0.991
BN2166_0001760	BN2166_0027870	A0A0K3C795	A0A0K3CI84	Uncharacterized protein.	annotation not available	0.996
BN2166_0001760	BN2166_0030010	A0A0K3C795	A0A0K3CF35	Uncharacterized protein.	annotation not available	0.979
BN2166_0001760	BN2166_0030260	A0A0K3C795	A0A0K3CF62	Uncharacterized protein.	annotation not available	0.988
BN2166_0001760	BN2166_0030530	A0A0K3C795	A0A0K3CF33	Uncharacterized protein.	FGENESH: predicted gene_5.598 protein.	0.956
BN2166_0001760	BN2166_0033040	A0A0K3C795	A0A0K3CES9	Uncharacterized protein.	annotation not available	0.997
BN2166_0001760	BN2166_0033370	A0A0K3C795	A0A0K3CJV1	Uncharacterized protein.	annotation not available	0.970
BN2166_0001760	BN2166_0034360	A0A0K3C795	A0A0K3CGC4	Uncharacterized protein.	annotation not available	0.994
BN2166_0001760	BN2166_0034380	A0A0K3C795	A0A0K3CG78	Uncharacterized protein.	annotation not available	0.997
BN2166_0001760	BN2166_0034700	A0A0K3C795	A0A0K3CCY6	Uncharacterized protein.	BY PROTMAP: gi\|814543081\|emb\|CEQ39458.1\| SPOSA6832_00967 [Sporidiobolus salmonicolor].	0.982
BN2166_0001760	BN2166_0036120	A0A0K3C795	A0A0K3CKL5	Uncharacterized protein.	Putative WD-repeat protein.	0.992

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