(20 nodes) Small-subunit processome network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	BN2166_0006950	U3 small nucleolar RNA-associated protein 4. (1025 aa)
	BN2166_0009950	Nrap protein-domain containing protein. (1308 aa)
	BN2166_0014890	BY PROTMAP: gi\|647401307\|emb\|CDR47456.1\| RHTO0S14e03884g1_1 [Rhodosporidium toruloides]. (882 aa)
	BN2166_0025850	BY PROTMAP: gi\|814539488\|emb\|CEQ43147.1\| SPOSA6832_05049, partial [Sporidiobolus salmonicolor]. (1045 aa)
	BN2166_0034700	BY PROTMAP: gi\|814543081\|emb\|CEQ39458.1\| SPOSA6832_00967 [Sporidiobolus salmonicolor]. (613 aa)
	BN2166_0010620	Ribosome biogenesis protein Noc4. (647 aa)
	BN2166_0033040	annotation not available (660 aa)
	BN2166_0030530	FGENESH: predicted gene_5.598 protein. (844 aa)
	BN2166_0030010	annotation not available (1507 aa)
	BN2166_0020120	WD40-repeat-containing domain protein. (916 aa)
	BN2166_0050400	FGENESH: predicted gene_9.386 protein. (1175 aa)
	BN2166_0026170	annotation not available (871 aa)
	BN2166_0044030	WD40-repeat-containing domain protein. (555 aa)
	BN2166_0033370	annotation not available (2125 aa)
	BN2166_0036120	Putative WD-repeat protein. (1012 aa)
	BN2166_0057480	FGENESH: predicted gene_11.244 protein. (891 aa)
	BN2166_0048370	DRIM domain-containing protein. (2568 aa)
	BN2166_0069880	WD_REPEATS_REGION domain-containing protein. (567 aa)
	BN2166_0070930	Putative WD repeat protein. (907 aa)
	BN2166_0062470	U3 small nucleolar RNA-associated protein 10. (2114 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0006950	BN2166_0009950	A0A0K3C5A3	A0A0K3C608	U3 small nucleolar RNA-associated protein 4.	Nrap protein-domain containing protein.	0.998
BN2166_0006950	BN2166_0010620	A0A0K3C5A3	A0A0K3CDE7	U3 small nucleolar RNA-associated protein 4.	Ribosome biogenesis protein Noc4.	0.998
BN2166_0006950	BN2166_0014890	A0A0K3C5A3	A0A0K3C9T0	U3 small nucleolar RNA-associated protein 4.	BY PROTMAP: gi\|647401307\|emb\|CDR47456.1\| RHTO0S14e03884g1_1 [Rhodosporidium toruloides].	0.998
BN2166_0006950	BN2166_0020120	A0A0K3C5A3	A0A0K3CG26	U3 small nucleolar RNA-associated protein 4.	WD40-repeat-containing domain protein.	0.998
BN2166_0006950	BN2166_0025850	A0A0K3C5A3	A0A0K3CAE3	U3 small nucleolar RNA-associated protein 4.	BY PROTMAP: gi\|814539488\|emb\|CEQ43147.1\| SPOSA6832_05049, partial [Sporidiobolus salmonicolor].	0.995
BN2166_0006950	BN2166_0026170	A0A0K3C5A3	A0A0K3CHR6	U3 small nucleolar RNA-associated protein 4.	annotation not available	0.999
BN2166_0006950	BN2166_0030010	A0A0K3C5A3	A0A0K3CF35	U3 small nucleolar RNA-associated protein 4.	annotation not available	0.999
BN2166_0006950	BN2166_0030530	A0A0K3C5A3	A0A0K3CF33	U3 small nucleolar RNA-associated protein 4.	FGENESH: predicted gene_5.598 protein.	0.999
BN2166_0006950	BN2166_0033040	A0A0K3C5A3	A0A0K3CES9	U3 small nucleolar RNA-associated protein 4.	annotation not available	0.999
BN2166_0006950	BN2166_0033370	A0A0K3C5A3	A0A0K3CJV1	U3 small nucleolar RNA-associated protein 4.	annotation not available	0.998
BN2166_0006950	BN2166_0034700	A0A0K3C5A3	A0A0K3CCY6	U3 small nucleolar RNA-associated protein 4.	BY PROTMAP: gi\|814543081\|emb\|CEQ39458.1\| SPOSA6832_00967 [Sporidiobolus salmonicolor].	0.998
BN2166_0006950	BN2166_0036120	A0A0K3C5A3	A0A0K3CKL5	U3 small nucleolar RNA-associated protein 4.	Putative WD-repeat protein.	0.999
BN2166_0006950	BN2166_0044030	A0A0K3C5A3	A0A0K3CIS0	U3 small nucleolar RNA-associated protein 4.	WD40-repeat-containing domain protein.	0.998
BN2166_0006950	BN2166_0048370	A0A0K3C5A3	A0A0K3CP64	U3 small nucleolar RNA-associated protein 4.	DRIM domain-containing protein.	0.997
BN2166_0006950	BN2166_0050400	A0A0K3C5A3	A0A0K3CHN9	U3 small nucleolar RNA-associated protein 4.	FGENESH: predicted gene_9.386 protein.	0.998
BN2166_0006950	BN2166_0057480	A0A0K3C5A3	A0A0K3CMI3	U3 small nucleolar RNA-associated protein 4.	FGENESH: predicted gene_11.244 protein.	0.998
BN2166_0006950	BN2166_0062470	A0A0K3C5A3	A0A0K3CT51	U3 small nucleolar RNA-associated protein 4.	U3 small nucleolar RNA-associated protein 10.	0.999
BN2166_0006950	BN2166_0069880	A0A0K3C5A3	A0A0K3CQZ4	U3 small nucleolar RNA-associated protein 4.	WD_REPEATS_REGION domain-containing protein.	0.999
BN2166_0006950	BN2166_0070930	A0A0K3C5A3	A0A0K3CRA4	U3 small nucleolar RNA-associated protein 4.	Putative WD repeat protein.	0.999
BN2166_0009950	BN2166_0006950	A0A0K3C608	A0A0K3C5A3	Nrap protein-domain containing protein.	U3 small nucleolar RNA-associated protein 4.	0.998

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