STRINGSTRING
BN2166_0004000 BN2166_0004000 BN2166_0007650 BN2166_0007650 BN2166_0002720 BN2166_0002720 BN2166_0026890 BN2166_0026890 BN2166_0039280 BN2166_0039280 BN2166_0044090 BN2166_0044090 BN2166_0028170 BN2166_0028170 BN2166_0045690 BN2166_0045690 BN2166_0052940 BN2166_0052940 BN2166_0039370 BN2166_0039370 BN2166_0054560 BN2166_0054560 BN2166_0069140 BN2166_0069140 BN2166_0066620 BN2166_0066620 BN2166_0074420 BN2166_0074420
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0004000FGENESH: predicted gene_1.400 protein. (401 aa)
BN2166_0007650Pyridoxal phosphate-dependent transferase. (428 aa)
BN2166_00027205-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (646 aa)
BN2166_0026890BY PROTMAP: gi|342320911|gb|EGU12849.1| Isocitrate lyase [Rhodotorula glutinis ATCC 204091]. (992 aa)
BN2166_0039280FGENESH: predicted gene_7.313 protein. (855 aa)
BN2166_0044090BY PROTMAP: gi|342321546|gb|EGU13479.1| D-amino-acid oxidase [Rhodotorula glutinis ATCC 204091]. (748 aa)
BN2166_0028170BY PROTMAP: gi|342320962|gb|EGU12900.1| Isocitrate lyase [Rhodotorula glutinis ATCC 204091]. (1481 aa)
BN2166_0045690FGENESH: predicted gene_8.424 protein. (433 aa)
BN2166_0052940Malate synthase; Belongs to the malate synthase family. (537 aa)
BN2166_0039370annotation not available (368 aa)
BN2166_0054560annotation not available (531 aa)
BN2166_0069140annotation not available (549 aa)
BN2166_0066620BY PROTMAP: gi|647400586|emb|CDR46191.1| RHTO0S12e01420g1_1 [Rhodosporidium toruloides]. (437 aa)
BN2166_0074420FGENESH: predicted gene_18.93 protein. (329 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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