STRINGSTRING
BN2166_0012350 BN2166_0012350 BN2166_0012400 BN2166_0012400 BN2166_0028750 BN2166_0028750 BN2166_0019520 BN2166_0019520 BN2166_0031120 BN2166_0031120 BN2166_0032320 BN2166_0032320 BN2166_0060300 BN2166_0060300 BN2166_0063150 BN2166_0063150 BN2166_0061840 BN2166_0061840 BN2166_0062980 BN2166_0062980 BN2166_0063680 BN2166_0063680 BN2166_0070680 BN2166_0070680
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0012350FGENESH: predicted gene_2.404 protein. (220 aa)
BN2166_0012400BY PROTMAP: gi|647394720|emb|CDR35954.1| RHTO0S01e10902g1_1 [Rhodosporidium toruloides]. (316 aa)
BN2166_0028750FGENESH: predicted gene_5.420 protein. (557 aa)
BN2166_0019520Ribosomal protein subunit Mrp10. (137 aa)
BN2166_0031120BY PROTMAP: gi|342319574|gb|EGU11521.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (600 aa)
BN2166_0032320Uncharacterized protein. (156 aa)
BN2166_0060300annotation not available (803 aa)
BN2166_0063150annotation not available (791 aa)
BN2166_0061840Uncharacterized protein. (306 aa)
BN2166_0062980Mitogen-activated protein kinase. (344 aa)
BN2166_0063680Uncharacterized protein. (340 aa)
BN2166_0070680BY PROTMAP: gi|342320304|gb|EGU12245.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (580 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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