44 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0051320	N terminus of Rad21 / Rec8 like protein-domain containing protein. (698 aa)
	BN2166_0058590	BY PROTMAP: gi\|647398513\|emb\|CDR42529.1\| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
	BN2166_0060380	BY PROTMAP: gi\|472586258\|gb\|EMS23786.1\| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
	BN2166_0058860	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (842 aa)
	BN2166_0064690	BY PROTMAP: gi\|342319058\|gb\|EGU11010.1\| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
	BN2166_0047320	BY PROTMAP: gi\|342319987\|gb\|EGU11932.1\| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
	BN2166_0048770	WD_REPEATS_REGION domain-containing protein. (1291 aa)
	BN2166_0073200	Serine/threonine-protein phosphatase. (306 aa)
	BN2166_0007500	CDC45 family. (736 aa)
	BN2166_0054420	BY PROTMAP: gi\|647394313\|emb\|CDR35542.1\| RHTO0S01e01640g1_1 [Rhodosporidium toruloides]. (404 aa)
	BN2166_0002940	annotation not available (115 aa)
	BN2166_0015600	annotation not available (1265 aa)
	BN2166_0004360	zf-RING-like domain-containing protein. (425 aa)
	BN2166_0054770	ERCC4 domain-containing protein. (1060 aa)
	BN2166_0010040	DNA helicase; Belongs to the MCM family. (2462 aa)
	BN2166_0009230	annotation not available (173 aa)
	BN2166_0012140	DNA polymerase. (1990 aa)
	BN2166_0011180	BY PROTMAP: gi\|342319958\|gb\|EGU11903.1\| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
	BN2166_0023950	DNA helicase; Belongs to the MCM family. (1074 aa)
	BN2166_0015840	FGENESH: predicted gene_3.35 protein. (295 aa)
	BN2166_0025450	Sld5 domain-containing protein. (249 aa)
	BN2166_0074450	DNA repair protein, SNF2 family. (852 aa)
	BN2166_0016890	DNA polymerase subunit Cdc27. (418 aa)
	BN2166_0015980	BY PROTMAP: gi\|342319127\|gb\|EGU11078.1\| Hst3 protein [Rhodotorula glutinis ATCC 204091]. (711 aa)
	BN2166_0028300	Uncharacterized protein. (423 aa)
	BN2166_0004570	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
	BN2166_0006320	Rad51-associated protein Brh2. (1137 aa)
	BN2166_0008170	Checkpoint protein; Belongs to the HUS1 family. (295 aa)
	BN2166_0026010	P-loop containing nucleoside triphosphate hydrolase protein. (1185 aa)
	BN2166_0039050	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
	BN2166_0028130	FGENESH: predicted gene_5.358 protein. (325 aa)
	BN2166_0015970	DUF1767 domain-containing protein. (430 aa)
	BN2166_0074460	annotation not available (661 aa)
	BN2166_0030460	BY PROTMAP: gi\|342321067\|gb\|EGU13005.1\| putative Hst3 protein [Rhodotorula glutinis ATCC 204091]. (509 aa)
	BN2166_0038290	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (773 aa)
	BN2166_0039440	annotation not available (268 aa)
	BN2166_0036510	annotation not available (1160 aa)
	BN2166_0057520	DNA helicase; Belongs to the MCM family. (731 aa)
	BN2166_0026220	BY PROTMAP: gi\|342320882\|gb\|EGU12820.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (579 aa)
	BN2166_0027720	BY PROTMAP: gi\|647399037\|emb\|CDR43407.1\| RHTO0S08e01508g1_1 [Rhodosporidium toruloides]. (1125 aa)
	BN2166_0044580	DNA helicase; Belongs to the MCM family. (939 aa)
	BN2166_0044760	Protein kinase-like domain-containing protein. (671 aa)
	BN2166_0031670	BY PROTMAP: gi\|342319608\|gb\|EGU11555.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (694 aa)
	BN2166_0053080	DNA helicase; Belongs to the MCM family. (880 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0002940	BN2166_0006320	A0A0K3C6F4	A0A0K3CCB5	annotation not available	Rad51-associated protein Brh2.	0.987
BN2166_0002940	BN2166_0031670	A0A0K3C6F4	A0A0K3CJE9	annotation not available	BY PROTMAP: gi\|342319608\|gb\|EGU11555.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].	0.900
BN2166_0004360	BN2166_0026010	A0A0K3C7V1	A0A0K3CDW1	zf-RING-like domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.997
BN2166_0004360	BN2166_0026220	A0A0K3C7V1	A0A0K3CHS2	zf-RING-like domain-containing protein.	BY PROTMAP: gi\|342320882\|gb\|EGU12820.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].	0.608
BN2166_0004360	BN2166_0027720	A0A0K3C7V1	A0A0K3CI70	zf-RING-like domain-containing protein.	BY PROTMAP: gi\|647399037\|emb\|CDR43407.1\| RHTO0S08e01508g1_1 [Rhodosporidium toruloides].	0.996
BN2166_0004360	BN2166_0028300	A0A0K3C7V1	A0A0K3CB41	zf-RING-like domain-containing protein.	Uncharacterized protein.	0.997
BN2166_0004360	BN2166_0039440	A0A0K3C7V1	A0A0K3CGI4	zf-RING-like domain-containing protein.	annotation not available	0.537
BN2166_0004360	BN2166_0051320	A0A0K3C7V1	A0A0K3CQ30	zf-RING-like domain-containing protein.	N terminus of Rad21 / Rec8 like protein-domain containing protein.	0.632
BN2166_0004570	BN2166_0006320	A0A0K3CBS7	A0A0K3CCB5	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	Rad51-associated protein Brh2.	0.995
BN2166_0004570	BN2166_0007500	A0A0K3CBS7	A0A0K3C5E7	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	CDC45 family.	0.812
BN2166_0004570	BN2166_0008170	A0A0K3CBS7	A0A0K3CCR3	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	Checkpoint protein; Belongs to the HUS1 family.	0.685
BN2166_0004570	BN2166_0010040	A0A0K3CBS7	A0A0K3C8F4	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DNA helicase; Belongs to the MCM family.	0.601
BN2166_0004570	BN2166_0011180	A0A0K3CBS7	A0A0K3C9D3	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	BY PROTMAP: gi\|342319958\|gb\|EGU11903.1\| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091].	0.981
BN2166_0004570	BN2166_0012140	A0A0K3CBS7	A0A0K3C906	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DNA polymerase.	0.873
BN2166_0004570	BN2166_0015600	A0A0K3CBS7	A0A0K3C7K5	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	annotation not available	0.945
BN2166_0004570	BN2166_0015840	A0A0K3CBS7	A0A0K3CA26	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	FGENESH: predicted gene_3.35 protein.	0.484
BN2166_0004570	BN2166_0015970	A0A0K3CBS7	A0A0K3CEW2	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DUF1767 domain-containing protein.	0.870
BN2166_0004570	BN2166_0016890	A0A0K3CBS7	A0A0K3CAE5	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DNA polymerase subunit Cdc27.	0.844
BN2166_0004570	BN2166_0023950	A0A0K3CBS7	A0A0K3C9U6	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	DNA helicase; Belongs to the MCM family.	0.743
BN2166_0004570	BN2166_0025450	A0A0K3CBS7	A0A0K3CAA0	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	Sld5 domain-containing protein.	0.546

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