STRINGSTRING
BN2166_0059220 BN2166_0059220 BN2166_0053980 BN2166_0053980 BN2166_0002280 BN2166_0002280 BN2166_0056660 BN2166_0056660 BN2166_0009970 BN2166_0009970 BN2166_0002050 BN2166_0002050 BN2166_0002200 BN2166_0002200 BN2166_0010650 BN2166_0010650 BN2166_0003640 BN2166_0003640 BN2166_0011550 BN2166_0011550 BN2166_0000260 BN2166_0000260 BN2166_0004030 BN2166_0004030 BN2166_0015550 BN2166_0015550 BN2166_0004260 BN2166_0004260 BN2166_0008890 BN2166_0008890 BN2166_0005410 BN2166_0005410 BN2166_0009540 BN2166_0009540 BN2166_0009280 BN2166_0009280 BN2166_0009780 BN2166_0009780 BN2166_0008260 BN2166_0008260 BN2166_0008510 BN2166_0008510 BN2166_0022050 BN2166_0022050 BN2166_0010510 BN2166_0010510 BN2166_0010710 BN2166_0010710 BN2166_0024850 BN2166_0024850 BN2166_0026950 BN2166_0026950 BN2166_0019090 BN2166_0019090 BN2166_0002270 BN2166_0002270 BN2166_0002320 BN2166_0002320 BN2166_0002420 BN2166_0002420 BN2166_0028650 BN2166_0028650 BN2166_0020640 BN2166_0020640 BN2166_0018080 BN2166_0018080 BN2166_0018230 BN2166_0018230 BN2166_0003670 BN2166_0003670 BN2166_0018210 BN2166_0018210 BN2166_0004420 BN2166_0004420 BN2166_0019460 BN2166_0019460 BN2166_0031300 BN2166_0031300 BN2166_0023190 BN2166_0023190 BN2166_0021260 BN2166_0021260 BN2166_0007720 BN2166_0007720 BN2166_0021660 BN2166_0021660 BN2166_0022560 BN2166_0022560 BN2166_0009520 BN2166_0009520 BN2166_0026840 BN2166_0026840 BN2166_0035500 BN2166_0035500 BN2166_0036000 BN2166_0036000 BN2166_0036300 BN2166_0036300 BN2166_0026160 BN2166_0026160 BN2166_0027060 BN2166_0027060 BN2166_0027730 BN2166_0027730 BN2166_0028630 BN2166_0028630 BN2166_0029630 BN2166_0029630 BN2166_0029310 BN2166_0029310 BN2166_0042300 BN2166_0042300 BN2166_0031010 BN2166_0031010 BN2166_0042900 BN2166_0042900 BN2166_0035640 BN2166_0035640 BN2166_0009960 BN2166_0009960 BN2166_0018320 BN2166_0018320 BN2166_0031710 BN2166_0031710 BN2166_0044150 BN2166_0044150 BN2166_0032630 BN2166_0032630 BN2166_0044450 BN2166_0044450 BN2166_0032410 BN2166_0032410 BN2166_0032610 BN2166_0032610 BN2166_0038190 BN2166_0038190 BN2166_0047150 BN2166_0047150 BN2166_0035810 BN2166_0035810 BN2166_0022020 BN2166_0022020 BN2166_0022570 BN2166_0022570 BN2166_0039480 BN2166_0039480 BN2166_0042540 BN2166_0042540 BN2166_0043140 BN2166_0043140 BN2166_0044790 BN2166_0044790 BN2166_0040360 BN2166_0040360 BN2166_0027470 BN2166_0027470 BN2166_0040810 BN2166_0040810 BN2166_0070420 BN2166_0070420 BN2166_0028420 BN2166_0028420 BN2166_0042730 BN2166_0042730 BN2166_0046090 BN2166_0046090 BN2166_0046290 BN2166_0046290 BN2166_0053950 BN2166_0053950 BN2166_0044030 BN2166_0044030 BN2166_0044830 BN2166_0044830 BN2166_0047940 BN2166_0047940 BN2166_0047990 BN2166_0047990 BN2166_0046130 BN2166_0046130 BN2166_0044710 BN2166_0044710 BN2166_0047180 BN2166_0047180 BN2166_0046210 BN2166_0046210 BN2166_0050890 BN2166_0050890 BN2166_0073970 BN2166_0073970 BN2166_0051140 BN2166_0051140 BN2166_0058800 BN2166_0058800 BN2166_0049230 BN2166_0049230 BN2166_0049430 BN2166_0049430 BN2166_0046860 BN2166_0046860 BN2166_0049680 BN2166_0049680 BN2166_0035570 BN2166_0035570 BN2166_0049310 BN2166_0049310 BN2166_0055640 BN2166_0055640 BN2166_0062700 BN2166_0062700 BN2166_0050960 BN2166_0050960 BN2166_0039020 BN2166_0039020 BN2166_0052210 BN2166_0052210 BN2166_0052760 BN2166_0052760 BN2166_0065050 BN2166_0065050 BN2166_0065150 BN2166_0065150 BN2166_0058340 BN2166_0058340 BN2166_0058590 BN2166_0058590 BN2166_0057180 BN2166_0057180 BN2166_0061590 BN2166_0061590 BN2166_0057510 BN2166_0057510 BN2166_0044820 BN2166_0044820 BN2166_0060030 BN2166_0060030 BN2166_0058460 BN2166_0058460 BN2166_0060370 BN2166_0060370 BN2166_0071950 BN2166_0071950 BN2166_0048520 BN2166_0048520 BN2166_0064430 BN2166_0064430 BN2166_0065030 BN2166_0065030 BN2166_0062860 BN2166_0062860 BN2166_0065830 BN2166_0065830 BN2166_0069840 BN2166_0069840 BN2166_0052320 BN2166_0052320 BN2166_0070740 BN2166_0070740 BN2166_0065610 BN2166_0065610 BN2166_0072040 BN2166_0072040 BN2166_0069280 BN2166_0069280 BN2166_0055020 BN2166_0055020 BN2166_0055820 BN2166_0055820 BN2166_0070310 BN2166_0070310
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0059220UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (123 aa)
BN2166_0053980Histone H3; Belongs to the histone H3 family. (136 aa)
BN2166_0002280Histone H3; Belongs to the histone H3 family. (136 aa)
BN2166_0056660Histone H2A; Belongs to the histone H2A family. (159 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0002050Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (165 aa)
BN2166_0002200Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (128 aa)
BN2166_00106503'-5' exonuclease domain-containing protein. (966 aa)
BN2166_0003640annotation not available (731 aa)
BN2166_0011550FGENESH: predicted gene_2.324 protein. (381 aa)
BN2166_0000260RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0004030BY PROTMAP: gi|472581506|gb|EMS19240.1| Histone H3 [Rhodosporidium toruloides NP11]. (137 aa)
BN2166_0015550Uncharacterized protein. (514 aa)
BN2166_0004260annotation not available (783 aa)
BN2166_0008890annotation not available (1636 aa)
BN2166_0005410FGENESH: predicted gene_1.541 protein. (1044 aa)
BN2166_0009540Histone H2A; Belongs to the histone H2A family. (132 aa)
BN2166_0009280BY PROTMAP: gi|647397983|emb|CDR41493.1| RHTO0S06e02322g1_1 [Rhodosporidium toruloides]. (1311 aa)
BN2166_0009780BY PROTMAP: gi|342319889|gb|EGU11834.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (274 aa)
BN2166_0008260annotation not available (433 aa)
BN2166_0008510BY PROTMAP: gi|647397902|emb|CDR41309.1| RHTO0S06e00562g1_1 [Rhodosporidium toruloides]. (623 aa)
BN2166_0022050FK506-binding protein. (395 aa)
BN2166_0010510Pol II transcription elongation factor. (587 aa)
BN2166_0010710annotation not available (737 aa)
BN2166_0024850Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (478 aa)
BN2166_0026950Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (187 aa)
BN2166_0019090FGENESH: predicted gene_3.360 protein. (563 aa)
BN2166_0002270Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
BN2166_0002320BY PROTMAP: gi|586493947|ref|XP_006877418.1| PREDICTED: histone H3.3-like [Chrysochloris asiatica]. (113 aa)
BN2166_0002420annotation not available (545 aa)
BN2166_0028650WD40-repeat-containing domain protein. (772 aa)
BN2166_0020640BY PROTMAP: gi|342320161|gb|EGU12104.1| Argonaute2 AGO2 [Rhodotorula glutinis ATCC 204091]. (929 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0018230Histone H2A; Belongs to the histone H2A family. (83 aa)
BN2166_0003670annotation not available (140 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0004420RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0019460BY PROTMAP: gi|342320109|gb|EGU12052.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (639 aa)
BN2166_0031300Belongs to the actin family. (794 aa)
BN2166_0023190annotation not available (343 aa)
BN2166_0021260Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (570 aa)
BN2166_0007720Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (142 aa)
BN2166_0021660E3 ubiquitin protein ligase. (879 aa)
BN2166_0022560BY PROTMAP: gi|814539372|emb|CEQ43229.1| SPOSA6832_05140 [Sporidiobolus salmonicolor]. (726 aa)
BN2166_0009520Histone H2A; Belongs to the histone H2A family. (161 aa)
BN2166_0026840annotation not available (442 aa)
BN2166_0035500Camp-dependent protein kinase regulatory subunit. (551 aa)
BN2166_0036000annotation not available (1441 aa)
BN2166_0036300annotation not available (1530 aa)
BN2166_0026160annotation not available (596 aa)
BN2166_0027060Uncharacterized protein. (479 aa)
BN2166_0027730Putative DNA helicase INO80. (1591 aa)
BN2166_0028630WD_REPEATS_REGION domain-containing protein. (1212 aa)
BN2166_0029630annotation not available (1156 aa)
BN2166_0029310RNA polymerase III subunit Rpc25-domain containing protein. (236 aa)
BN2166_0042300Cell division control protein 16. (727 aa)
BN2166_0031010SNF2 family N-terminal domain-domain containing protein. (1329 aa)
BN2166_0042900Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1809 aa)
BN2166_0035640annotation not available (807 aa)
BN2166_0009960Histone H2A; Belongs to the histone H2A family. (137 aa)
BN2166_0018320FGENESH: predicted gene_3.283 protein. (1443 aa)
BN2166_0031710annotation not available (1090 aa)
BN2166_0044150annotation not available (1957 aa)
BN2166_0032630BY PROTMAP: gi|342319639|gb|EGU11586.1| Smarcc1 protein [Rhodotorula glutinis ATCC 204091]. (643 aa)
BN2166_0044450annotation not available (322 aa)
BN2166_0032410BY PROTMAP: gi|647400055|emb|CDR45160.1| RHTO0S10e05776g1_1 [Rhodosporidium toruloides]. (882 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0038190FGENESH: predicted gene_7.204 protein. (1474 aa)
BN2166_0047150BY PROTMAP: gi|342320000|gb|EGU11944.1| histone H3 [Rhodotorula glutinis ATCC 204091]. (165 aa)
BN2166_0035810BY PROTMAP: gi|342319767|gb|EGU11714.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (907 aa)
BN2166_0022020Belongs to the nucleosome assembly protein (NAP) family. (436 aa)
BN2166_0022570FGENESH: predicted gene_4.33 protein. (310 aa)
BN2166_0039480annotation not available (510 aa)
BN2166_0042540Uncharacterized protein conserved in bacteria (DUF2236)-domain containing protein. (545 aa)
BN2166_0043140annotation not available (712 aa)
BN2166_0044790BY PROTMAP: gi|342321517|gb|EGU13450.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1082 aa)
BN2166_0040360annotation not available (745 aa)
BN2166_0027470tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. KAE1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. The EKC/KEOPS complex also promotes both telomere uncapping and telomere elongation. Th [...] (448 aa)
BN2166_0040810Uncharacterized protein. (199 aa)
BN2166_0070420Belongs to the nucleosome assembly protein (NAP) family. (278 aa)
BN2166_0028420FGENESH: predicted gene_5.387 protein. (743 aa)
BN2166_0042730FGENESH: predicted gene_8.128 protein. (1218 aa)
BN2166_0046090Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (798 aa)
BN2166_0046290annotation not available (243 aa)
BN2166_0053950DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (585 aa)
BN2166_0044030WD40-repeat-containing domain protein. (555 aa)
BN2166_0044830BY PROTMAP: gi|727140648|emb|CEG76916.1| Putative Histone deacetylase RPD3 [Rhizopus microsporus]. (118 aa)
BN2166_0047940BY PROTMAP: gi|342321379|gb|EGU13313.1| ATPase [Rhodotorula glutinis ATCC 204091]. (1497 aa)
BN2166_0047990annotation not available (1095 aa)
BN2166_0046130BY PROTMAP: gi|342319424|gb|EGU11373.1| Histone deacetylase clr3 [Rhodotorula glutinis ATCC 204091]. (881 aa)
BN2166_0044710BY PROTMAP: gi|342321520|gb|EGU13453.1| Helicase SWR1 [Rhodotorula glutinis ATCC 204091]. (1703 aa)
BN2166_0047180FGENESH: predicted gene_9.64 protein. (931 aa)
BN2166_0046210Belongs to the protein kinase superfamily. (354 aa)
BN2166_0050890annotation not available (987 aa)
BN2166_0073970BY PROTMAP: gi|647401014|emb|CDR46937.1| RHTO0S13e03774g1_1 [Rhodosporidium toruloides]. (300 aa)
BN2166_0051140Structural maintenance of chromosomes protein. (1205 aa)
BN2166_0058800YL1 nuclear protein-domain containing protein. (642 aa)
BN2166_0049230annotation not available (1250 aa)
BN2166_0049430SNF5 / SMARCB1 / INI1-domain containing protein. (924 aa)
BN2166_0046860Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (388 aa)
BN2166_0049680annotation not available (493 aa)
BN2166_0035570RNA-dependent RNA polymerase. (712 aa)
BN2166_0049310annotation not available (216 aa)
BN2166_0055640RNA-dependent RNA polymerase. (805 aa)
BN2166_0062700FGENESH: predicted gene_13.100 protein. (672 aa)
BN2166_0050960BY PROTMAP: gi|342321257|gb|EGU13191.1| YEATS family protein [Rhodotorula glutinis ATCC 204091]. (276 aa)
BN2166_0039020Uncharacterized protein. (767 aa)
BN2166_0052210annotation not available (547 aa)
BN2166_0052760annotation not available (1447 aa)
BN2166_0065050Putative acetylpolyamine aminohydrolase. (353 aa)
BN2166_0065150Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (722 aa)
BN2166_0058340Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II. (722 aa)
BN2166_0058590BY PROTMAP: gi|647398513|emb|CDR42529.1| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
BN2166_0057180annotation not available (453 aa)
BN2166_0061590BY PROTMAP: gi|472586134|gb|EMS23662.1| nucleus protein [Rhodosporidium toruloides NP11]. (198 aa)
BN2166_0057510BY PROTMAP: gi|342320247|gb|EGU12189.1| putative GAMM1 protein [Rhodotorula glutinis ATCC 204091]. (337 aa)
BN2166_0044820FGENESH: predicted gene_8.337 protein. (196 aa)
BN2166_0060030FGENESH: predicted gene_12.163 protein. (507 aa)
BN2166_0058460FGENESH: predicted gene_12.6 protein. (446 aa)
BN2166_0060370Uncharacterized protein; Belongs to the actin family. (948 aa)
BN2166_0071950BY PROTMAP: gi|647396450|emb|CDR38666.1| RHTO0S03e11914g1_1 [Rhodosporidium toruloides]. (1951 aa)
BN2166_0048520annotation not available (264 aa)
BN2166_00644303' exoribonuclease family, domain 1-domain containing protein. (346 aa)
BN2166_0065030Chromatin modification-related protein. (502 aa)
BN2166_0062860Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (844 aa)
BN2166_0065830BY PROTMAP: gi|647400664|emb|CDR46331.1| RHTO0S12e03180g1_1 [Rhodosporidium toruloides]. (1032 aa)
BN2166_0069840BY PROTMAP: gi|647403688|emb|CDR49772.1| RHTO0S32e00540g1_1 [Rhodosporidium toruloides]. (515 aa)
BN2166_0052320FGENESH: predicted gene_10.69 protein. (535 aa)
BN2166_0070740BY PROTMAP: gi|357620831|gb|EHJ72875.1| 26S protease regulatory subunit [Danaus plexippus]; Belongs to the AAA ATPase family. (334 aa)
BN2166_0065610FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (586 aa)
BN2166_0072040WD40-repeat-containing domain protein. (422 aa)
BN2166_0069280HIT-type domain-containing protein. (191 aa)
BN2166_0055020FGENESH: predicted gene_10.339 protein; Belongs to the actin family. (580 aa)
BN2166_0055820BY PROTMAP: gi|647399668|emb|CDR44569.1| RHTO0S09e06414g1_1 [Rhodosporidium toruloides]. (1940 aa)
BN2166_0070310annotation not available (1136 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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