STRINGSTRING
BN2166_0042990 BN2166_0042990 BN2166_0024470 BN2166_0024470 BN2166_0023870 BN2166_0023870 BN2166_0023320 BN2166_0023320 BN2166_0036510 BN2166_0036510 BN2166_0021170 BN2166_0021170 BN2166_0034630 BN2166_0034630 BN2166_0032410 BN2166_0032410 BN2166_0030660 BN2166_0030660 BN2166_0030930 BN2166_0030930 BN2166_0012170 BN2166_0012170 BN2166_0025760 BN2166_0025760 BN2166_0010270 BN2166_0010270 BN2166_0035350 BN2166_0035350 BN2166_0023730 BN2166_0023730 BN2166_0007820 BN2166_0007820 BN2166_0032750 BN2166_0032750 BN2166_0020030 BN2166_0020030 BN2166_0004270 BN2166_0004270 BN2166_0020640 BN2166_0020640 BN2166_0016710 BN2166_0016710 BN2166_0020090 BN2166_0020090 BN2166_0005200 BN2166_0005200 BN2166_0017180 BN2166_0017180 BN2166_0001370 BN2166_0001370 BN2166_0014990 BN2166_0014990 BN2166_0011030 BN2166_0011030 BN2166_0010430 BN2166_0010430 BN2166_0009130 BN2166_0009130 BN2166_0009390 BN2166_0009390 BN2166_0017050 BN2166_0017050 BN2166_0008340 BN2166_0008340 BN2166_0003360 BN2166_0003360 BN2166_0069190 BN2166_0069190 BN2166_0068640 BN2166_0068640 BN2166_0074350 BN2166_0074350 BN2166_0047320 BN2166_0047320 BN2166_0065140 BN2166_0065140 BN2166_0059960 BN2166_0059960 BN2166_0004280 BN2166_0004280 BN2166_0013050 BN2166_0013050 BN2166_0071860 BN2166_0071860 BN2166_0071730 BN2166_0071730 BN2166_0054870 BN2166_0054870 BN2166_0054770 BN2166_0054770 BN2166_0066310 BN2166_0066310 BN2166_0068180 BN2166_0068180 BN2166_0065110 BN2166_0065110 BN2166_0070040 BN2166_0070040 BN2166_0012700 BN2166_0012700 BN2166_0001130 BN2166_0001130 BN2166_0058860 BN2166_0058860 BN2166_0045720 BN2166_0045720 BN2166_0052460 BN2166_0052460 BN2166_0052360 BN2166_0052360 BN2166_0054480 BN2166_0054480 BN2166_0054030 BN2166_0054030 BN2166_0063350 BN2166_0063350 BN2166_0038570 BN2166_0038570 BN2166_0053380 BN2166_0053380 BN2166_0050130 BN2166_0050130 BN2166_0056450 BN2166_0056450 BN2166_0030670 BN2166_0030670 BN2166_0053750 BN2166_0053750 BN2166_0028770 BN2166_0028770 BN2166_0052850 BN2166_0052850 BN2166_0052700 BN2166_0052700 BN2166_0044790 BN2166_0044790 BN2166_0039210 BN2166_0039210 BN2166_0038760 BN2166_0038760
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0042990Putative ribonuclease III. (292 aa)
BN2166_0024470FGENESH: predicted gene_4.223 protein. (221 aa)
BN2166_0023870Uncharacterized protein. (429 aa)
BN2166_0023320Endonuclease. (360 aa)
BN2166_0036510annotation not available (1160 aa)
BN2166_0021170PINc domain-containing protein. (1482 aa)
BN2166_0034630BY PROTMAP: gi|472586455|gb|EMS23983.1| endoribonuclease Dicer [Rhodosporidium toruloides NP11]; Belongs to the helicase family. Dicer subfamily. (2056 aa)
BN2166_0032410BY PROTMAP: gi|647400055|emb|CDR45160.1| RHTO0S10e05776g1_1 [Rhodosporidium toruloides]. (882 aa)
BN2166_0030660DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (485 aa)
BN2166_0030930Endo/exonuclease/phosphatase domain-containing protein. (428 aa)
BN2166_0012170FGENESH: predicted gene_2.386 protein. (547 aa)
BN2166_002576020S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (504 aa)
BN2166_0010270FGENESH: predicted gene_2.196 protein. (1656 aa)
BN2166_0035350BY PROTMAP: gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]. (857 aa)
BN2166_0023730annotation not available (510 aa)
BN2166_0007820BY PROTMAP: gi|342319288|gb|EGU11237.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (660 aa)
BN2166_0032750FGENESH: predicted gene_6.197 protein. (1407 aa)
BN2166_0020030Ribonuclease H2, subunit B. (387 aa)
BN2166_0004270FGENESH: predicted gene_1.427 protein. (857 aa)
BN2166_0020640BY PROTMAP: gi|342320161|gb|EGU12104.1| Argonaute2 AGO2 [Rhodotorula glutinis ATCC 204091]. (929 aa)
BN2166_0016710BY PROTMAP: gi|342319103|gb|EGU11054.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (678 aa)
BN2166_0020090annotation not available (232 aa)
BN2166_0005200annotation not available (1304 aa)
BN2166_0017180Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (346 aa)
BN2166_0001370Translin. (300 aa)
BN2166_0014990Ribonuclease T2-like protein; Belongs to the RNase T2 family. (424 aa)
BN2166_0011030BY PROTMAP: gi|342319947|gb|EGU11892.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (288 aa)
BN2166_0010430annotation not available (330 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0009390BY PROTMAP: gi|342320065|gb|EGU12008.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]. (2008 aa)
BN2166_0017050Mitotic control protein dis3; Belongs to the RNR ribonuclease family. (1020 aa)
BN2166_0008340Beta-lactamase-like protein. (440 aa)
BN2166_0003360tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (470 aa)
BN2166_0069190BY PROTMAP: gi|342318905|gb|EGU10861.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]. (2227 aa)
BN2166_0068640Ribonuclease P/MRP protein subunit. (789 aa)
BN2166_0074350FGENESH: predicted gene_18.86 protein. (726 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0065140Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (382 aa)
BN2166_0059960Fcf1-domain containing protein. (177 aa)
BN2166_0004280FGENESH: predicted gene_1.428 protein. (830 aa)
BN2166_0013050FGENESH: predicted gene_2.474 protein. (744 aa)
BN2166_0071860annotation not available (184 aa)
BN2166_0071730BY PROTMAP: gi|472588684|gb|EMS26156.1| UV DNA damage endonuclease [Rhodosporidium toruloides NP11]. (576 aa)
BN2166_0054870BY PROTMAP: gi|342319148|gb|EGU11098.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]. (1773 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0066310FGENESH: predicted gene_14.181 protein. (1107 aa)
BN2166_0068180Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (187 aa)
BN2166_0065110BY PROTMAP: gi|342319042|gb|EGU10994.1| amino acid transporter [Rhodotorula glutinis ATCC 204091]. (455 aa)
BN2166_0070040BY PROTMAP: gi|342320283|gb|EGU12224.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]. (1298 aa)
BN2166_0012700DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (613 aa)
BN2166_0001130BY PROTMAP: gi|472586022|gb|EMS23564.1| endoribonuclease Dicer [Rhodosporidium toruloides NP11]; Belongs to the helicase family. Dicer subfamily. (1384 aa)
BN2166_0058860Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (842 aa)
BN2166_0045720Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (743 aa)
BN2166_0052460Cir_N domain-containing protein. (402 aa)
BN2166_0052360Uncharacterized protein. (404 aa)
BN2166_0054480annotation not available (875 aa)
BN2166_0054030Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (686 aa)
BN2166_0063350BY PROTMAP: gi|342319506|gb|EGU11454.1| Nuclease domain protein [Rhodotorula glutinis ATCC 204091]. (107 aa)
BN2166_0038570tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] (346 aa)
BN2166_0053380RNase P subunit p30-domain containing protein. (375 aa)
BN2166_0050130Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (433 aa)
BN2166_0056450RNase H domain-containing protein. (539 aa)
BN2166_0030670DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (503 aa)
BN2166_0053750tRNA_int_end_N2 domain-containing protein. (517 aa)
BN2166_0028770Uncharacterized protein. (87 aa)
BN2166_0052850annotation not available (944 aa)
BN2166_0052700FGENESH: predicted gene_10.107 protein. (1330 aa)
BN2166_0044790BY PROTMAP: gi|342321517|gb|EGU13450.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1082 aa)
BN2166_0039210annotation not available (319 aa)
BN2166_0038760DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (733 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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