STRINGSTRING
BN2166_0007500 BN2166_0007500 BN2166_0005250 BN2166_0005250 BN2166_0005150 BN2166_0005150 BN2166_0003050 BN2166_0003050 BN2166_0000150 BN2166_0000150 BN2166_0003640 BN2166_0003640 BN2166_0004040 BN2166_0004040 BN2166_0069270 BN2166_0069270 BN2166_0068670 BN2166_0068670 BN2166_0065470 BN2166_0065470 BN2166_0074060 BN2166_0074060 BN2166_0074780 BN2166_0074780 BN2166_0057520 BN2166_0057520 BN2166_0062530 BN2166_0062530 BN2166_0065140 BN2166_0065140 BN2166_0060380 BN2166_0060380 BN2166_0055910 BN2166_0055910 BN2166_0065250 BN2166_0065250 BN2166_0040470 BN2166_0040470 BN2166_0064150 BN2166_0064150 BN2166_0038720 BN2166_0038720 BN2166_0053080 BN2166_0053080 BN2166_0052830 BN2166_0052830 BN2166_0037140 BN2166_0037140 BN2166_0037190 BN2166_0037190 BN2166_0038290 BN2166_0038290 BN2166_0035180 BN2166_0035180 BN2166_0039440 BN2166_0039440 BN2166_0022570 BN2166_0022570 BN2166_0036580 BN2166_0036580 PIF1 PIF1 BN2166_0012900 BN2166_0012900 BN2166_0002260 BN2166_0002260 BN2166_0015750 BN2166_0015750 BN2166_0007090 BN2166_0007090 BN2166_0004410 BN2166_0004410 BN2166_0006180 BN2166_0006180 BN2166_0010040 BN2166_0010040 BN2166_0008380 BN2166_0008380 BN2166_0011190 BN2166_0011190 BN2166_0020050 BN2166_0020050 BN2166_0009780 BN2166_0009780 BN2166_0012140 BN2166_0012140 BN2166_0008260 BN2166_0008260 BN2166_0012590 BN2166_0012590 BN2166_0012640 BN2166_0012640 BN2166_0010710 BN2166_0010710 BN2166_0023950 BN2166_0023950 BN2166_0011910 BN2166_0011910 BN2166_0015840 BN2166_0015840 BN2166_0014180 BN2166_0014180 BN2166_0025450 BN2166_0025450 BN2166_0016890 BN2166_0016890 BN2166_0026100 BN2166_0026100 BN2166_0014560 BN2166_0014560 BN2166_0016730 BN2166_0016730 BN2166_0027950 BN2166_0027950 BN2166_0017180 BN2166_0017180 BN2166_0003470 BN2166_0003470 BN2166_0004570 BN2166_0004570 BN2166_0022240 BN2166_0022240 BN2166_0019260 BN2166_0019260 BN2166_0020380 BN2166_0020380 BN2166_0022560 BN2166_0022560 BN2166_0035600 BN2166_0035600 BN2166_0025130 BN2166_0025130 BN2166_0011720 BN2166_0011720 BN2166_0039050 BN2166_0039050 BN2166_0027880 BN2166_0027880 BN2166_0028330 BN2166_0028330 BN2166_0028160 BN2166_0028160 BN2166_0015870 BN2166_0015870 BN2166_0015970 BN2166_0015970 BN2166_0030180 BN2166_0030180 BN2166_0042650 BN2166_0042650 BN2166_0017520 BN2166_0017520 BN2166_0017970 BN2166_0017970 BN2166_0032580 BN2166_0032580 BN2166_0037180 BN2166_0037180 BN2166_0038730 BN2166_0038730 BN2166_0039480 BN2166_0039480 BN2166_0039780 BN2166_0039780 BN2166_0050300 BN2166_0050300 BN2166_0039210 BN2166_0039210 BN2166_0026670 BN2166_0026670 BN2166_0037770 BN2166_0037770 BN2166_0046860 BN2166_0046860 BN2166_0051940 BN2166_0051940 BN2166_0049180 BN2166_0049180 BN2166_0059300 BN2166_0059300 BN2166_0058350 BN2166_0058350 BN2166_0049990 BN2166_0049990 BN2166_0052700 BN2166_0052700 BN2166_0031670 BN2166_0031670 BN2166_0044760 BN2166_0044760 BN2166_0031070 BN2166_0031070 BN2166_0044680 BN2166_0044680 BN2166_0044580 BN2166_0044580 BN2166_0053950 BN2166_0053950 BN2166_0075140 BN2166_0075140 BN2166_0074890 BN2166_0074890 BN2166_0065610 BN2166_0065610 BN2166_0075350 BN2166_0075350 BN2166_0074850 BN2166_0074850 BN2166_0048520 BN2166_0048520
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0007500CDC45 family. (736 aa)
BN2166_0005250BY PROTMAP: gi|342320736|gb|EGU12675.1| DNA ligase [Rhodotorula glutinis ATCC 204091]. (946 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0003050Rtf2 RING-finger-domain containing protein. (327 aa)
BN2166_0000150DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (599 aa)
BN2166_0003640annotation not available (731 aa)
BN2166_0004040FGENESH: predicted gene_1.404 protein. (651 aa)
BN2166_0069270Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (837 aa)
BN2166_0068670DNA ligase. (872 aa)
BN2166_0065470BY PROTMAP: gi|342319021|gb|EGU10973.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1208 aa)
BN2166_0074060DNA primase; Belongs to the eukaryotic-type primase small subunit family. (452 aa)
BN2166_0074780FGENESH: predicted gene_20.1 protein. (596 aa)
BN2166_0057520DNA helicase; Belongs to the MCM family. (731 aa)
BN2166_0062530annotation not available (835 aa)
BN2166_0065140Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (382 aa)
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
BN2166_0055910annotation not available (256 aa)
BN2166_0065250Uncharacterized protein. (259 aa)
BN2166_0040470BY PROTMAP: gi|647401525|emb|CDR47825.1| RHTO0S15e02454g1_1 [Rhodosporidium toruloides]. (1530 aa)
BN2166_0064150annotation not available (529 aa)
BN2166_0038720annotation not available (935 aa)
BN2166_0053080DNA helicase; Belongs to the MCM family. (880 aa)
BN2166_0052830DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2246 aa)
BN2166_0037140Origin recognition complex (ORC) subunit 3 N-terminus-domain containing protein. (725 aa)
BN2166_0037190Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (708 aa)
BN2166_0038290DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (773 aa)
BN2166_0035180MRC1 domain-containing protein. (1494 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0022570FGENESH: predicted gene_4.33 protein. (310 aa)
BN2166_0036580Chromosome segregation in meiosis protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (363 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (681 aa)
BN2166_0012900DNA ligase. (1333 aa)
BN2166_0002260DNA polymerase. (1555 aa)
BN2166_0015750DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (300 aa)
BN2166_0007090Nucleolar complex-associated protein 3. (1012 aa)
BN2166_0004410Origin recognition complex (ORC) subunit 5 C-terminus-domain containing protein. (703 aa)
BN2166_0006180BY PROTMAP: gi|342320697|gb|EGU12636.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (970 aa)
BN2166_0010040DNA helicase; Belongs to the MCM family. (2462 aa)
BN2166_0008380Putative DNA polymerase. (210 aa)
BN2166_0011190DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1245 aa)
BN2166_0020050DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (907 aa)
BN2166_0009780BY PROTMAP: gi|342319889|gb|EGU11834.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (274 aa)
BN2166_0012140DNA polymerase. (1990 aa)
BN2166_0008260annotation not available (433 aa)
BN2166_0012590annotation not available (455 aa)
BN2166_0012640annotation not available (817 aa)
BN2166_0010710annotation not available (737 aa)
BN2166_0023950DNA helicase; Belongs to the MCM family. (1074 aa)
BN2166_0011910Uncharacterized protein. (686 aa)
BN2166_0015840FGENESH: predicted gene_3.35 protein. (295 aa)
BN2166_0014180annotation not available (1032 aa)
BN2166_0025450Sld5 domain-containing protein. (249 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0026100Putative RFC3-DNA replication factor C, 40 kDa subunit. (357 aa)
BN2166_0014560D-aminoacyl-tRNA deacylase. (219 aa)
BN2166_0016730FGENESH: predicted gene_3.124 protein. (789 aa)
BN2166_0027950annotation not available (813 aa)
BN2166_0017180Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (346 aa)
BN2166_0003470FGENESH: predicted gene_1.347 protein. (673 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
BN2166_0022240FGENESH: predicted gene_3.675 protein. (157 aa)
BN2166_0019260ATP-dependent DNA helicase; Belongs to the helicase family. (867 aa)
BN2166_0020380annotation not available (143 aa)
BN2166_0022560BY PROTMAP: gi|814539372|emb|CEQ43229.1| SPOSA6832_05140 [Sporidiobolus salmonicolor]. (726 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0025130WD_REPEATS_REGION domain-containing protein. (1955 aa)
BN2166_0011720GINS complex, Psf3 component. (180 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0027880NPL4 family-domain containing protein. (745 aa)
BN2166_0028330FGENESH: predicted gene_5.378 protein. (732 aa)
BN2166_0028160Replication factor C subunit 4. (438 aa)
BN2166_0015870BY PROTMAP: gi|647400216|emb|CDR45502.1| RHTO0S11e01002g1_1 [Rhodosporidium toruloides]; Belongs to the MT-A70-like family. (360 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0030180Thioredoxin family protein. (670 aa)
BN2166_0042650Timeless protein-domain containing protein. (1214 aa)
BN2166_0017520BY PROTMAP: gi|472583956|gb|EMS21572.1| DNA ligase [Rhodosporidium toruloides NP11]. (545 aa)
BN2166_0017970Gamma DNA-directed DNA polymerase. (1522 aa)
BN2166_0032580Replication factor C subunit 1. (887 aa)
BN2166_0037180Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (924 aa)
BN2166_0038730annotation not available (415 aa)
BN2166_0039480annotation not available (510 aa)
BN2166_0039780Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism. Adenylate kinase activity is critical for regulation of the phosphate utilization and the AMP de novo biosynthesis pathways. (891 aa)
BN2166_0050300DNA replication origin binding protein. (539 aa)
BN2166_0039210annotation not available (319 aa)
BN2166_0026670FGENESH: predicted gene_5.212 protein. (360 aa)
BN2166_0037770FGENESH: predicted gene_7.162 protein. (539 aa)
BN2166_0046860Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (388 aa)
BN2166_0051940DNA_pol_B_exo1 domain-containing protein. (224 aa)
BN2166_0049180FGENESH: predicted gene_9.264 protein. (462 aa)
BN2166_0059300Cleft lip and palate associated transmembrane protein. (664 aa)
BN2166_0058350annotation not available (862 aa)
BN2166_0049990DNA polymerase. (1118 aa)
BN2166_0052700FGENESH: predicted gene_10.107 protein. (1330 aa)
BN2166_0031670BY PROTMAP: gi|342319608|gb|EGU11555.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (694 aa)
BN2166_0044760Protein kinase-like domain-containing protein. (671 aa)
BN2166_0031070P-loop containing nucleoside triphosphate hydrolase protein. (687 aa)
BN2166_0044680BY PROTMAP: gi|647395342|emb|CDR36677.1| RHTO0S02e05380g1_1 [Rhodosporidium toruloides]. (936 aa)
BN2166_0044580DNA helicase; Belongs to the MCM family. (939 aa)
BN2166_0053950DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (585 aa)
BN2166_0075140FGENESH: predicted gene_25.4 protein. (590 aa)
BN2166_0074890FGENESH: predicted gene_21.4 protein. (585 aa)
BN2166_0065610FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (586 aa)
BN2166_0075350FGENESH: predicted gene_29.4 protein. (581 aa)
BN2166_0074850FGENESH: predicted gene_20.8 protein. (406 aa)
BN2166_0048520annotation not available (264 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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