STRINGSTRING
BN2166_0062550 BN2166_0062550 BN2166_0062590 BN2166_0062590 BN2166_0067080 BN2166_0067080 BN2166_0068930 BN2166_0068930 BN2166_0054770 BN2166_0054770 BN2166_0071680 BN2166_0071680 BN2166_0071730 BN2166_0071730 BN2166_0071860 BN2166_0071860 BN2166_0072470 BN2166_0072470 BN2166_0005200 BN2166_0005200 BN2166_0008900 BN2166_0008900 BN2166_0009130 BN2166_0009130 BN2166_0010510 BN2166_0010510 BN2166_0016440 BN2166_0016440 BN2166_0017230 BN2166_0017230 BN2166_0020240 BN2166_0020240 BN2166_0022640 BN2166_0022640 BN2166_0019410 BN2166_0019410 BN2166_0023890 BN2166_0023890 BN2166_0008170 BN2166_0008170 BN2166_0026990 BN2166_0026990 BN2166_0011870 BN2166_0011870 BN2166_0039050 BN2166_0039050 BN2166_0017520 BN2166_0017520 BN2166_0032380 BN2166_0032380 BN2166_0032610 BN2166_0032610 BN2166_0039440 BN2166_0039440 BN2166_0037810 BN2166_0037810 BN2166_0039530 BN2166_0039530 BN2166_0043930 BN2166_0043930 BN2166_0049990 BN2166_0049990 BN2166_0036720 BN2166_0036720 BN2166_0052830 BN2166_0052830
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0062550TFIIH subunit Tfb4/p34. (347 aa)
BN2166_0062590FGENESH: predicted gene_13.89 protein. (1342 aa)
BN2166_0067080annotation not available (871 aa)
BN2166_0068930Uncharacterized protein. (1118 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0071680BY PROTMAP: gi|647396479|emb|CDR38723.1| RHTO0S03e12574g1_1 [Rhodosporidium toruloides]. (240 aa)
BN2166_0071730BY PROTMAP: gi|472588684|gb|EMS26156.1| UV DNA damage endonuclease [Rhodosporidium toruloides NP11]. (576 aa)
BN2166_0071860annotation not available (184 aa)
BN2166_0072470annotation not available (815 aa)
BN2166_0005200annotation not available (1304 aa)
BN2166_0008900XPC-binding domain-domain containing protein. (403 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0010510Pol II transcription elongation factor. (587 aa)
BN2166_0016440RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
BN2166_0017230General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (451 aa)
BN2166_0020240annotation not available (633 aa)
BN2166_0022640DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
BN2166_0019410BY PROTMAP: gi|342320107|gb|EGU12050.1| Endopeptidase [Rhodotorula glutinis ATCC 204091]; Belongs to the AAA ATPase family. (409 aa)
BN2166_0023890annotation not available (374 aa)
BN2166_0008170Checkpoint protein; Belongs to the HUS1 family. (295 aa)
BN2166_0026990annotation not available (1030 aa)
BN2166_0011870annotation not available (1800 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0017520BY PROTMAP: gi|472583956|gb|EMS21572.1| DNA ligase [Rhodosporidium toruloides NP11]. (545 aa)
BN2166_0032380annotation not available (641 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0037810BY PROTMAP: gi|342320515|gb|EGU12455.1| glycosylase/lyase [Rhodotorula glutinis ATCC 204091]. (491 aa)
BN2166_0039530ATP-dependent 26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (403 aa)
BN2166_0043930BY PROTMAP: gi|342321555|gb|EGU13488.1| Hydrophilic protein [Rhodotorula glutinis ATCC 204091]. (370 aa)
BN2166_0049990DNA polymerase. (1118 aa)
BN2166_0036720FGENESH: predicted gene_7.57 protein. (327 aa)
BN2166_0052830DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2246 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.