STRINGSTRING
BN2166_0043710 BN2166_0043710 KU80 KU80 BN2166_0073200 BN2166_0073200 BN2166_0005150 BN2166_0005150 BN2166_0007500 BN2166_0007500 BN2166_0008450 BN2166_0008450 BN2166_0002940 BN2166_0002940 BN2166_0002310 BN2166_0002310 BN2166_0015600 BN2166_0015600 BN2166_0004360 BN2166_0004360 BN2166_0010040 BN2166_0010040 BN2166_0009130 BN2166_0009130 BN2166_0009230 BN2166_0009230 BN2166_0012140 BN2166_0012140 BN2166_0011180 BN2166_0011180 BN2166_0023950 BN2166_0023950 BN2166_0015840 BN2166_0015840 BN2166_0025450 BN2166_0025450 BN2166_0016890 BN2166_0016890 BN2166_0015980 BN2166_0015980 BN2166_0028300 BN2166_0028300 BN2166_0004570 BN2166_0004570 BN2166_0023090 BN2166_0023090 BN2166_0006320 BN2166_0006320 BN2166_0008170 BN2166_0008170 BN2166_0028340 BN2166_0028340 BN2166_0026010 BN2166_0026010 BN2166_0039050 BN2166_0039050 BN2166_0028130 BN2166_0028130 BN2166_0015970 BN2166_0015970 BN2166_0030460 BN2166_0030460 BN2166_0017520 BN2166_0017520 BN2166_0031010 BN2166_0031010 BN2166_0038290 BN2166_0038290 BN2166_0039440 BN2166_0039440 BN2166_0036510 BN2166_0036510 BN2166_0026220 BN2166_0026220 BN2166_0027720 BN2166_0027720 BN2166_0052500 BN2166_0052500 BN2166_0046090 BN2166_0046090 BN2166_0044580 BN2166_0044580 BN2166_0044760 BN2166_0044760 BN2166_0031670 BN2166_0031670 BN2166_0049110 BN2166_0049110 BN2166_0053080 BN2166_0053080 BN2166_0054480 BN2166_0054480 BN2166_0064900 BN2166_0064900 BN2166_0058590 BN2166_0058590 BN2166_0060030 BN2166_0060030 BN2166_0060380 BN2166_0060380 BN2166_0045720 BN2166_0045720 BN2166_0058860 BN2166_0058860 BN2166_0064690 BN2166_0064690 BN2166_0046420 BN2166_0046420 BN2166_0059810 BN2166_0059810 BN2166_0047320 BN2166_0047320 BN2166_0048770 BN2166_0048770 BN2166_0074450 BN2166_0074450 BN2166_0051320 BN2166_0051320 BN2166_0064910 BN2166_0064910 BN2166_0054420 BN2166_0054420 BN2166_0054770 BN2166_0054770 BN2166_0057520 BN2166_0057520 BN2166_0071760 BN2166_0071760 BN2166_0059270 BN2166_0059270 BN2166_0074460 BN2166_0074460 BN2166_0064920 BN2166_0064920
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0043710DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (402 aa)
KU80BY PROTMAP: gi|636745342|gb|AIA21644.1| KU80 [Rhodosporidium toruloides]. (922 aa)
BN2166_0073200Serine/threonine-protein phosphatase. (306 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0007500CDC45 family. (736 aa)
BN2166_0008450BY PROTMAP: gi|636745340|gb|AIA21643.1| KU70 [Rhodosporidium toruloides]. (706 aa)
BN2166_0002940annotation not available (115 aa)
BN2166_0002310DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (364 aa)
BN2166_0015600annotation not available (1265 aa)
BN2166_0004360zf-RING-like domain-containing protein. (425 aa)
BN2166_0010040DNA helicase; Belongs to the MCM family. (2462 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0009230annotation not available (173 aa)
BN2166_0012140DNA polymerase. (1990 aa)
BN2166_0011180BY PROTMAP: gi|342319958|gb|EGU11903.1| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
BN2166_0023950DNA helicase; Belongs to the MCM family. (1074 aa)
BN2166_0015840FGENESH: predicted gene_3.35 protein. (295 aa)
BN2166_0025450Sld5 domain-containing protein. (249 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0015980BY PROTMAP: gi|342319127|gb|EGU11078.1| Hst3 protein [Rhodotorula glutinis ATCC 204091]. (711 aa)
BN2166_0028300Uncharacterized protein. (423 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
BN2166_0023090BY PROTMAP: gi|342319803|gb|EGU11749.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (564 aa)
BN2166_0006320Rad51-associated protein Brh2. (1137 aa)
BN2166_0008170Checkpoint protein; Belongs to the HUS1 family. (295 aa)
BN2166_0028340annotation not available (925 aa)
BN2166_0026010P-loop containing nucleoside triphosphate hydrolase protein. (1185 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0028130FGENESH: predicted gene_5.358 protein. (325 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0030460BY PROTMAP: gi|342321067|gb|EGU13005.1| putative Hst3 protein [Rhodotorula glutinis ATCC 204091]. (509 aa)
BN2166_0017520BY PROTMAP: gi|472583956|gb|EMS21572.1| DNA ligase [Rhodosporidium toruloides NP11]. (545 aa)
BN2166_0031010SNF2 family N-terminal domain-domain containing protein. (1329 aa)
BN2166_0038290DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (773 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0036510annotation not available (1160 aa)
BN2166_0026220BY PROTMAP: gi|342320882|gb|EGU12820.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (579 aa)
BN2166_0027720BY PROTMAP: gi|647399037|emb|CDR43407.1| RHTO0S08e01508g1_1 [Rhodosporidium toruloides]. (1125 aa)
BN2166_0052500FGENESH: predicted gene_10.87 protein. (292 aa)
BN2166_0046090Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (798 aa)
BN2166_0044580DNA helicase; Belongs to the MCM family. (939 aa)
BN2166_0044760Protein kinase-like domain-containing protein. (671 aa)
BN2166_0031670BY PROTMAP: gi|342319608|gb|EGU11555.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (694 aa)
BN2166_0049110FGENESH: predicted gene_9.257 protein. (762 aa)
BN2166_0053080DNA helicase; Belongs to the MCM family. (880 aa)
BN2166_0054480annotation not available (875 aa)
BN2166_0064900Uncharacterized protein. (189 aa)
BN2166_0058590BY PROTMAP: gi|647398513|emb|CDR42529.1| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
BN2166_0060030FGENESH: predicted gene_12.163 protein. (507 aa)
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
BN2166_0045720Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (743 aa)
BN2166_0058860Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (842 aa)
BN2166_0064690BY PROTMAP: gi|342319058|gb|EGU11010.1| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
BN2166_0046420Belongs to the RecA family. (319 aa)
BN2166_0059810zf-C2HE domain-containing protein. (234 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0048770WD_REPEATS_REGION domain-containing protein. (1291 aa)
BN2166_0074450DNA repair protein, SNF2 family. (852 aa)
BN2166_0051320N terminus of Rad21 / Rec8 like protein-domain containing protein. (698 aa)
BN2166_0064910FGENESH: predicted gene_14.41 protein. (914 aa)
BN2166_0054420BY PROTMAP: gi|647394313|emb|CDR35542.1| RHTO0S01e01640g1_1 [Rhodosporidium toruloides]. (404 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0057520DNA helicase; Belongs to the MCM family. (731 aa)
BN2166_0071760BY PROTMAP: gi|342320802|gb|EGU12741.1| DNA polymerase lambda [Rhodotorula glutinis ATCC 204091]. (1020 aa)
BN2166_0059270annotation not available (736 aa)
BN2166_0074460annotation not available (661 aa)
BN2166_0064920AAA_23 domain-containing protein. (197 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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