STRINGSTRING
BN2166_0060380 BN2166_0060380 KU80 KU80 BN2166_0073200 BN2166_0073200 BN2166_0005150 BN2166_0005150 BN2166_0005250 BN2166_0005250 BN2166_0007500 BN2166_0007500 BN2166_0008450 BN2166_0008450 BN2166_0001440 BN2166_0001440 BN2166_0010750 BN2166_0010750 BN2166_0002940 BN2166_0002940 BN2166_0012900 BN2166_0012900 BN2166_0015600 BN2166_0015600 BN2166_0004360 BN2166_0004360 BN2166_0006160 BN2166_0006160 BN2166_0010040 BN2166_0010040 BN2166_0009130 BN2166_0009130 BN2166_0009230 BN2166_0009230 BN2166_0012140 BN2166_0012140 BN2166_0013540 BN2166_0013540 BN2166_0011180 BN2166_0011180 BN2166_0010810 BN2166_0010810 BN2166_0023950 BN2166_0023950 BN2166_0015840 BN2166_0015840 BN2166_0014180 BN2166_0014180 BN2166_0025450 BN2166_0025450 BN2166_0016890 BN2166_0016890 BN2166_0015980 BN2166_0015980 BN2166_0016730 BN2166_0016730 BN2166_0028200 BN2166_0028200 BN2166_0028300 BN2166_0028300 BN2166_0004570 BN2166_0004570 BN2166_0018610 BN2166_0018610 BN2166_0022240 BN2166_0022240 BN2166_0006320 BN2166_0006320 BN2166_0033550 BN2166_0033550 BN2166_0008170 BN2166_0008170 BN2166_0035600 BN2166_0035600 BN2166_0010270 BN2166_0010270 BN2166_0026010 BN2166_0026010 BN2166_0030890 BN2166_0030890 BN2166_0039050 BN2166_0039050 BN2166_0072770 BN2166_0072770 BN2166_0068670 BN2166_0068670 BN2166_0064920 BN2166_0064920 BN2166_0064520 BN2166_0064520 BN2166_0074460 BN2166_0074460 BN2166_0059270 BN2166_0059270 BN2166_0074780 BN2166_0074780 BN2166_0057520 BN2166_0057520 BN2166_0075140 BN2166_0075140 BN2166_0074890 BN2166_0074890 BN2166_0054770 BN2166_0054770 BN2166_0054420 BN2166_0054420 BN2166_0064910 BN2166_0064910 BN2166_0051320 BN2166_0051320 BN2166_0075350 BN2166_0075350 BN2166_0074850 BN2166_0074850 BN2166_0074450 BN2166_0074450 BN2166_0048770 BN2166_0048770 BN2166_0047320 BN2166_0047320 BN2166_0046420 BN2166_0046420 BN2166_0064690 BN2166_0064690 BN2166_0058860 BN2166_0058860 BN2166_0063640 BN2166_0063640 BN2166_0058010 BN2166_0058010 BN2166_0059430 BN2166_0059430 BN2166_0055910 BN2166_0055910 BN2166_0058590 BN2166_0058590 BN2166_0040470 BN2166_0040470 BN2166_0064900 BN2166_0064900 BN2166_0054030 BN2166_0054030 BN2166_0053080 BN2166_0053080 BN2166_0052980 BN2166_0052980 BN2166_0035170 BN2166_0035170 BN2166_0052190 BN2166_0052190 BN2166_0031670 BN2166_0031670 BN2166_0044760 BN2166_0044760 BN2166_0044580 BN2166_0044580 BN2166_0027720 BN2166_0027720 BN2166_0040560 BN2166_0040560 BN2166_0027470 BN2166_0027470 BN2166_0026220 BN2166_0026220 BN2166_0023320 BN2166_0023320 BN2166_0036510 BN2166_0036510 BN2166_0039440 BN2166_0039440 BN2166_0038290 BN2166_0038290 BN2166_0017520 BN2166_0017520 BN2166_0030460 BN2166_0030460 BN2166_0015970 BN2166_0015970 BN2166_0032090 BN2166_0032090 BN2166_0028130 BN2166_0028130
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
KU80BY PROTMAP: gi|636745342|gb|AIA21644.1| KU80 [Rhodosporidium toruloides]. (922 aa)
BN2166_0073200Serine/threonine-protein phosphatase. (306 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0005250BY PROTMAP: gi|342320736|gb|EGU12675.1| DNA ligase [Rhodotorula glutinis ATCC 204091]. (946 aa)
BN2166_0007500CDC45 family. (736 aa)
BN2166_0008450BY PROTMAP: gi|636745340|gb|AIA21643.1| KU70 [Rhodosporidium toruloides]. (706 aa)
BN2166_0001440annotation not available (361 aa)
BN2166_0010750Uncharacterized protein. (927 aa)
BN2166_0002940annotation not available (115 aa)
BN2166_0012900DNA ligase. (1333 aa)
BN2166_0015600annotation not available (1265 aa)
BN2166_0004360zf-RING-like domain-containing protein. (425 aa)
BN2166_0006160annotation not available (269 aa)
BN2166_0010040DNA helicase; Belongs to the MCM family. (2462 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0009230annotation not available (173 aa)
BN2166_0012140DNA polymerase. (1990 aa)
BN2166_0013540BY PROTMAP: gi|342321418|gb|EGU13352.1| Pyruvate carboxylase [Rhodotorula glutinis ATCC 204091]. (310 aa)
BN2166_0011180BY PROTMAP: gi|342319958|gb|EGU11903.1| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
BN2166_0010810SNF2 family N-terminal domain-domain containing protein. (896 aa)
BN2166_0023950DNA helicase; Belongs to the MCM family. (1074 aa)
BN2166_0015840FGENESH: predicted gene_3.35 protein. (295 aa)
BN2166_0014180annotation not available (1032 aa)
BN2166_0025450Sld5 domain-containing protein. (249 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0015980BY PROTMAP: gi|342319127|gb|EGU11078.1| Hst3 protein [Rhodotorula glutinis ATCC 204091]. (711 aa)
BN2166_0016730FGENESH: predicted gene_3.124 protein. (789 aa)
BN2166_0028200FGENESH: predicted gene_5.365 protein. (188 aa)
BN2166_0028300Uncharacterized protein. (423 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
BN2166_0018610annotation not available (709 aa)
BN2166_0022240FGENESH: predicted gene_3.675 protein. (157 aa)
BN2166_0006320Rad51-associated protein Brh2. (1137 aa)
BN2166_0033550Thyroid receptor-interacting protein 13. (552 aa)
BN2166_0008170Checkpoint protein; Belongs to the HUS1 family. (295 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0010270FGENESH: predicted gene_2.196 protein. (1656 aa)
BN2166_0026010P-loop containing nucleoside triphosphate hydrolase protein. (1185 aa)
BN2166_0030890DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1591 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0072770Rad51 domain-containing protein. (361 aa)
BN2166_0068670DNA ligase. (872 aa)
BN2166_0064920AAA_23 domain-containing protein. (197 aa)
BN2166_0064520BY PROTMAP: gi|472585507|gb|EMS23058.1| bloom syndrome protein [Rhodosporidium toruloides NP11]. (1529 aa)
BN2166_0074460annotation not available (661 aa)
BN2166_0059270annotation not available (736 aa)
BN2166_0074780FGENESH: predicted gene_20.1 protein. (596 aa)
BN2166_0057520DNA helicase; Belongs to the MCM family. (731 aa)
BN2166_0075140FGENESH: predicted gene_25.4 protein. (590 aa)
BN2166_0074890FGENESH: predicted gene_21.4 protein. (585 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0054420BY PROTMAP: gi|647394313|emb|CDR35542.1| RHTO0S01e01640g1_1 [Rhodosporidium toruloides]. (404 aa)
BN2166_0064910FGENESH: predicted gene_14.41 protein. (914 aa)
BN2166_0051320N terminus of Rad21 / Rec8 like protein-domain containing protein. (698 aa)
BN2166_0075350FGENESH: predicted gene_29.4 protein. (581 aa)
BN2166_0074850FGENESH: predicted gene_20.8 protein. (406 aa)
BN2166_0074450DNA repair protein, SNF2 family. (852 aa)
BN2166_0048770WD_REPEATS_REGION domain-containing protein. (1291 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0046420Belongs to the RecA family. (319 aa)
BN2166_0064690BY PROTMAP: gi|342319058|gb|EGU11010.1| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
BN2166_0058860Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (842 aa)
BN2166_0063640Belongs to the aldehyde dehydrogenase family. (595 aa)
BN2166_0058010annotation not available (933 aa)
BN2166_0059430annotation not available (762 aa)
BN2166_0055910annotation not available (256 aa)
BN2166_0058590BY PROTMAP: gi|647398513|emb|CDR42529.1| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
BN2166_0040470BY PROTMAP: gi|647401525|emb|CDR47825.1| RHTO0S15e02454g1_1 [Rhodosporidium toruloides]. (1530 aa)
BN2166_0064900Uncharacterized protein. (189 aa)
BN2166_0054030Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (686 aa)
BN2166_0053080DNA helicase; Belongs to the MCM family. (880 aa)
BN2166_0052980annotation not available (730 aa)
BN2166_0035170FGENESH: predicted gene_6.439 protein. (771 aa)
BN2166_0052190DNA mismatch repair protein MSH2; Component of the post-replicative DNA mismatch repair system (MMR). (986 aa)
BN2166_0031670BY PROTMAP: gi|342319608|gb|EGU11555.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (694 aa)
BN2166_0044760Protein kinase-like domain-containing protein. (671 aa)
BN2166_0044580DNA helicase; Belongs to the MCM family. (939 aa)
BN2166_0027720BY PROTMAP: gi|647399037|emb|CDR43407.1| RHTO0S08e01508g1_1 [Rhodosporidium toruloides]. (1125 aa)
BN2166_0040560RING-type domain-containing protein. (318 aa)
BN2166_0027470tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. KAE1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity. The EKC/KEOPS complex also promotes both telomere uncapping and telomere elongation. Th [...] (448 aa)
BN2166_0026220BY PROTMAP: gi|342320882|gb|EGU12820.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (579 aa)
BN2166_0023320Endonuclease. (360 aa)
BN2166_0036510annotation not available (1160 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0038290DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (773 aa)
BN2166_0017520BY PROTMAP: gi|472583956|gb|EMS21572.1| DNA ligase [Rhodosporidium toruloides NP11]. (545 aa)
BN2166_0030460BY PROTMAP: gi|342321067|gb|EGU13005.1| putative Hst3 protein [Rhodotorula glutinis ATCC 204091]. (509 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0032090BY PROTMAP: gi|647400090|emb|CDR45195.1| RHTO0S10e06590g1_1 [Rhodosporidium toruloides]. (965 aa)
BN2166_0028130FGENESH: predicted gene_5.358 protein. (325 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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