STRINGSTRING
BN2166_0065610 BN2166_0065610 BN2166_0072040 BN2166_0072040 BN2166_0069280 BN2166_0069280 BN2166_0055020 BN2166_0055020 BN2166_0068260 BN2166_0068260 BN2166_0055820 BN2166_0055820 BN2166_0062020 BN2166_0062020 BN2166_0070420 BN2166_0070420 BN2166_0073070 BN2166_0073070 BN2166_0038800 BN2166_0038800 BN2166_0056660 BN2166_0056660 BN2166_0009970 BN2166_0009970 BN2166_0002050 BN2166_0002050 BN2166_0002200 BN2166_0002200 BN2166_0002750 BN2166_0002750 BN2166_0005800 BN2166_0005800 BN2166_0011250 BN2166_0011250 BN2166_0000260 BN2166_0000260 BN2166_0015550 BN2166_0015550 BN2166_0015600 BN2166_0015600 BN2166_0003560 BN2166_0003560 BN2166_0004260 BN2166_0004260 BN2166_0016800 BN2166_0016800 BN2166_0008890 BN2166_0008890 BN2166_0005410 BN2166_0005410 BN2166_0018550 BN2166_0018550 BN2166_0009280 BN2166_0009280 BN2166_0022050 BN2166_0022050 BN2166_0010810 BN2166_0010810 BN2166_0002270 BN2166_0002270 BN2166_0018080 BN2166_0018080 BN2166_0018210 BN2166_0018210 BN2166_0004420 BN2166_0004420 BN2166_0018560 BN2166_0018560 BN2166_0019410 BN2166_0019410 BN2166_0031300 BN2166_0031300 BN2166_0007720 BN2166_0007720 BN2166_0021780 BN2166_0021780 BN2166_0008620 BN2166_0008620 BN2166_0022830 BN2166_0022830 BN2166_0026990 BN2166_0026990 BN2166_0027060 BN2166_0027060 BN2166_0027730 BN2166_0027730 BN2166_0031440 BN2166_0031440 BN2166_0029630 BN2166_0029630 BN2166_0031010 BN2166_0031010 BN2166_0031710 BN2166_0031710 BN2166_0044150 BN2166_0044150 BN2166_0032630 BN2166_0032630 BN2166_0032610 BN2166_0032610 BN2166_0035810 BN2166_0035810 BN2166_0022020 BN2166_0022020 BN2166_0036430 BN2166_0036430 BN2166_0043140 BN2166_0043140 BN2166_0027170 BN2166_0027170 BN2166_0028420 BN2166_0028420 BN2166_0042730 BN2166_0042730 BN2166_0046090 BN2166_0046090 BN2166_0047940 BN2166_0047940 BN2166_0047990 BN2166_0047990 BN2166_0044710 BN2166_0044710 BN2166_0058350 BN2166_0058350 BN2166_0058800 BN2166_0058800 BN2166_0049430 BN2166_0049430 BN2166_0034870 BN2166_0034870 BN2166_0049680 BN2166_0049680 BN2166_0035570 BN2166_0035570 BN2166_0049310 BN2166_0049310 BN2166_0055640 BN2166_0055640 BN2166_0050960 BN2166_0050960 BN2166_0038720 BN2166_0038720 BN2166_0058590 BN2166_0058590 BN2166_0057180 BN2166_0057180 BN2166_0061590 BN2166_0061590 BN2166_0060030 BN2166_0060030 BN2166_0064040 BN2166_0064040 BN2166_0074450 BN2166_0074450 BN2166_0063310 BN2166_0063310 BN2166_0069840 BN2166_0069840 BN2166_0052320 BN2166_0052320
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0065610FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (586 aa)
BN2166_0072040WD40-repeat-containing domain protein. (422 aa)
BN2166_0069280HIT-type domain-containing protein. (191 aa)
BN2166_0055020FGENESH: predicted gene_10.339 protein; Belongs to the actin family. (580 aa)
BN2166_0068260FGENESH: predicted gene_15.107 protein. (1346 aa)
BN2166_0055820BY PROTMAP: gi|647399668|emb|CDR44569.1| RHTO0S09e06414g1_1 [Rhodosporidium toruloides]. (1940 aa)
BN2166_0062020BY PROTMAP: gi|342319449|gb|EGU11397.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (1859 aa)
BN2166_0070420Belongs to the nucleosome assembly protein (NAP) family. (278 aa)
BN2166_0073070Uncharacterized protein. (2352 aa)
BN2166_0038800Regulator ustilago maydis 1 protein. (1045 aa)
BN2166_0056660Histone H2A; Belongs to the histone H2A family. (159 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0002050Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (165 aa)
BN2166_0002200Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (128 aa)
BN2166_0002750BY PROTMAP: gi|342319357|gb|EGU11306.1| DNA repair protein rad5 [Rhodotorula glutinis ATCC 204091]. (918 aa)
BN2166_0005800BY PROTMAP: gi|342320713|gb|EGU12652.1| Mot1 [Rhodotorula glutinis ATCC 204091]. (2019 aa)
BN2166_0011250SNF2 family N-terminal domain-domain containing protein. (1158 aa)
BN2166_0000260RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0015550Uncharacterized protein. (514 aa)
BN2166_0015600annotation not available (1265 aa)
BN2166_0003560annotation not available (429 aa)
BN2166_0004260annotation not available (783 aa)
BN2166_0016800annotation not available (1158 aa)
BN2166_0008890annotation not available (1636 aa)
BN2166_0005410FGENESH: predicted gene_1.541 protein. (1044 aa)
BN2166_0018550annotation not available (929 aa)
BN2166_0009280BY PROTMAP: gi|647397983|emb|CDR41493.1| RHTO0S06e02322g1_1 [Rhodosporidium toruloides]. (1311 aa)
BN2166_0022050FK506-binding protein. (395 aa)
BN2166_0010810SNF2 family N-terminal domain-domain containing protein. (896 aa)
BN2166_0002270Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (102 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0004420RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0018560FGENESH: predicted gene_3.307 protein. (351 aa)
BN2166_0019410BY PROTMAP: gi|342320107|gb|EGU12050.1| Endopeptidase [Rhodotorula glutinis ATCC 204091]; Belongs to the AAA ATPase family. (409 aa)
BN2166_0031300Belongs to the actin family. (794 aa)
BN2166_0007720Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (142 aa)
BN2166_0021780annotation not available (1558 aa)
BN2166_0008620Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (570 aa)
BN2166_0022830annotation not available (1277 aa)
BN2166_0026990annotation not available (1030 aa)
BN2166_0027060Uncharacterized protein. (479 aa)
BN2166_0027730Putative DNA helicase INO80. (1591 aa)
BN2166_0031440FGENESH: predicted gene_6.66 protein. (1054 aa)
BN2166_0029630annotation not available (1156 aa)
BN2166_0031010SNF2 family N-terminal domain-domain containing protein. (1329 aa)
BN2166_0031710annotation not available (1090 aa)
BN2166_0044150annotation not available (1957 aa)
BN2166_0032630BY PROTMAP: gi|342319639|gb|EGU11586.1| Smarcc1 protein [Rhodotorula glutinis ATCC 204091]. (643 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0035810BY PROTMAP: gi|342319767|gb|EGU11714.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (907 aa)
BN2166_0022020Belongs to the nucleosome assembly protein (NAP) family. (436 aa)
BN2166_0036430FGENESH: predicted gene_7.28 protein. (841 aa)
BN2166_0043140annotation not available (712 aa)
BN2166_0027170SNF2 family N-terminal domain-domain containing protein. (1221 aa)
BN2166_0028420FGENESH: predicted gene_5.387 protein. (743 aa)
BN2166_0042730FGENESH: predicted gene_8.128 protein. (1218 aa)
BN2166_0046090Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (798 aa)
BN2166_0047940BY PROTMAP: gi|342321379|gb|EGU13313.1| ATPase [Rhodotorula glutinis ATCC 204091]. (1497 aa)
BN2166_0047990annotation not available (1095 aa)
BN2166_0044710BY PROTMAP: gi|342321520|gb|EGU13453.1| Helicase SWR1 [Rhodotorula glutinis ATCC 204091]. (1703 aa)
BN2166_0058350annotation not available (862 aa)
BN2166_0058800YL1 nuclear protein-domain containing protein. (642 aa)
BN2166_0049430SNF5 / SMARCB1 / INI1-domain containing protein. (924 aa)
BN2166_0034870annotation not available (163 aa)
BN2166_0049680annotation not available (493 aa)
BN2166_0035570RNA-dependent RNA polymerase. (712 aa)
BN2166_0049310annotation not available (216 aa)
BN2166_0055640RNA-dependent RNA polymerase. (805 aa)
BN2166_0050960BY PROTMAP: gi|342321257|gb|EGU13191.1| YEATS family protein [Rhodotorula glutinis ATCC 204091]. (276 aa)
BN2166_0038720annotation not available (935 aa)
BN2166_0058590BY PROTMAP: gi|647398513|emb|CDR42529.1| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
BN2166_0057180annotation not available (453 aa)
BN2166_0061590BY PROTMAP: gi|472586134|gb|EMS23662.1| nucleus protein [Rhodosporidium toruloides NP11]. (198 aa)
BN2166_0060030FGENESH: predicted gene_12.163 protein. (507 aa)
BN2166_0064040RAD26-like SNF2 family DNA-dependent ATPase. (1445 aa)
BN2166_0074450DNA repair protein, SNF2 family. (852 aa)
BN2166_0063310Histone chaperone, ASF1-like protein. (213 aa)
BN2166_0069840BY PROTMAP: gi|647403688|emb|CDR49772.1| RHTO0S32e00540g1_1 [Rhodosporidium toruloides]. (515 aa)
BN2166_0052320FGENESH: predicted gene_10.69 protein. (535 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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