STRINGSTRING
BN2166_0007470 BN2166_0007470 BN2166_0004920 BN2166_0004920 BN2166_0019890 BN2166_0019890 BN2166_0027250 BN2166_0027250 BN2166_0017240 BN2166_0017240 BN2166_0021000 BN2166_0021000 BN2166_0017250 BN2166_0017250 BN2166_0005630 BN2166_0005630 BN2166_0004900 BN2166_0004900 BN2166_0052390 BN2166_0052390 BN2166_0054080 BN2166_0054080 BN2166_0008270 BN2166_0008270 BN2166_0010970 BN2166_0010970 BN2166_0064890 BN2166_0064890 BN2166_0063340 BN2166_0063340 BN2166_0037470 BN2166_0037470 BN2166_0047780 BN2166_0047780 BN2166_0046330 BN2166_0046330 BN2166_0043260 BN2166_0043260 BN2166_0024820 BN2166_0024820 BN2166_0021770 BN2166_0021770 BN2166_0034440 BN2166_0034440 BN2166_0033240 BN2166_0033240 BN2166_0028210 BN2166_0028210 BN2166_0074520 BN2166_0074520 BN2166_0068920 BN2166_0068920 BN2166_0071580 BN2166_0071580 BN2166_0055470 BN2166_0055470
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0007470annotation not available (345 aa)
BN2166_0004920Pex19 protein family-domain containing protein. (388 aa)
BN2166_0019890Signal recognition particle, SRP19 subunit. (260 aa)
BN2166_0027250Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (324 aa)
BN2166_0017240Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (218 aa)
BN2166_0021000Protein transporter SEC61 subunit alpha, variant; Belongs to the SecY/SEC61-alpha family. (475 aa)
BN2166_0017250annotation not available (438 aa)
BN2166_0005630Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (315 aa)
BN2166_0004900Signal recognition particle 14kD protein-domain containing protein. (209 aa)
BN2166_0052390Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (98 aa)
BN2166_0054080Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
BN2166_0008270annotation not available (138 aa)
BN2166_0010970annotation not available (694 aa)
BN2166_0064890Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (412 aa)
BN2166_0063340Uncharacterized protein. (129 aa)
BN2166_0037470Uncharacterized protein. (600 aa)
BN2166_0047780BY PROTMAP: gi|342319962|gb|EGU11907.1| Phosphatidyl synthase [Rhodotorula glutinis ATCC 204091]; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (298 aa)
BN2166_0046330TPR_REGION domain-containing protein. (222 aa)
BN2166_0043260Palmitoyltransferase PFA4; Mediates the reversible addition of palmitate to target proteins, thereby regulating their membrane association and biological function; Belongs to the DHHC palmitoyltransferase family. PFA4 subfamily. (518 aa)
BN2166_0024820BY PROTMAP: gi|342320827|gb|EGU12765.1| DUF967 domain protein [Rhodotorula glutinis ATCC 204091]. (184 aa)
BN2166_0021770Putative signal recognition particle 54 kDa protein. (612 aa)
BN2166_0034440NAC domain-domain containing protein. (150 aa)
BN2166_0033240annotation not available (670 aa)
BN2166_0028210Sec63 Brl domain-domain containing protein. (667 aa)
BN2166_0074520Translocation protein Sec62-domain containing protein. (280 aa)
BN2166_0068920Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (538 aa)
BN2166_0071580Microbody peroxisome biogenesis protein peroxin 3. (656 aa)
BN2166_0055470BY PROTMAP: gi|342320175|gb|EGU12117.1| Cytoplasmic protein [Rhodotorula glutinis ATCC 204091]. (363 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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