25 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	BN2166_0068080	FGENESH: predicted gene_15.89 protein. (391 aa)
	BN2166_0072440	Dor1-like family-domain containing protein. (871 aa)
	BN2166_0050760	Uncharacterized protein. (818 aa)
	BN2166_0044460	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family. (1002 aa)
	BN2166_0042390	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane. (921 aa)
	BN2166_0037580	Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (702 aa)
	BN2166_0044200	Vacuolar assembly protein DID2. (207 aa)
	BN2166_0017950	Vacuolar assembling/sorting protein VPS16. (956 aa)
	BN2166_0005710	BY PROTMAP: gi\|814540439\|emb\|CEQ42196.1\| SPOSA6832_04001, partial [Sporidiobolus salmonicolor]. (746 aa)
	BN2166_0054080	Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	BN2166_0016320	BY PROTMAP: gi\|647400273\|emb\|CDR45592.1\| RHTO0S11e02366g1_1 [Rhodosporidium toruloides]. (764 aa)
	BN2166_0040200	Vacuolar import and degradation protein-domain containing protein. (468 aa)
	BN2166_0012220	Uncharacterized protein. (3186 aa)
	BN2166_0008270	annotation not available (138 aa)
	BN2166_0005720	FGENESH: predicted gene_1.572 protein. (841 aa)
	BN2166_0016610	annotation not available (831 aa)
	BN2166_0017240	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (218 aa)
	BN2166_0011350	Uncharacterized protein. (739 aa)
	BN2166_0060320	ADP-ribosylation factor 3; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	BN2166_0068070	Uncharacterized protein. (1565 aa)
	BN2166_0050910	annotation not available (215 aa)
	BN2166_0055980	annotation not available (197 aa)
	BN2166_0055410	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament. (394 aa)
	BN2166_0043070	Uncharacterized protein. (888 aa)
	BN2166_0063830	annotation not available (1545 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0005710	BN2166_0005720	A0A0K3C886	A0A0K3CC22	BY PROTMAP: gi\|814540439\|emb\|CEQ42196.1\| SPOSA6832_04001, partial [Sporidiobolus salmonicolor].	FGENESH: predicted gene_1.572 protein.	0.928
BN2166_0005720	BN2166_0005710	A0A0K3CC22	A0A0K3C886	FGENESH: predicted gene_1.572 protein.	BY PROTMAP: gi\|814540439\|emb\|CEQ42196.1\| SPOSA6832_04001, partial [Sporidiobolus salmonicolor].	0.928
BN2166_0008270	BN2166_0016320	A0A0K3CCS3	A0A0K3CF15	annotation not available	BY PROTMAP: gi\|647400273\|emb\|CDR45592.1\| RHTO0S11e02366g1_1 [Rhodosporidium toruloides].	0.474
BN2166_0008270	BN2166_0054080	A0A0K3CCS3	A0A061AJT8	annotation not available	Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.	0.997
BN2166_0016320	BN2166_0008270	A0A0K3CF15	A0A0K3CCS3	BY PROTMAP: gi\|647400273\|emb\|CDR45592.1\| RHTO0S11e02366g1_1 [Rhodosporidium toruloides].	annotation not available	0.474
BN2166_0016320	BN2166_0044200	A0A0K3CF15	A0A0K3CFQ7	BY PROTMAP: gi\|647400273\|emb\|CDR45592.1\| RHTO0S11e02366g1_1 [Rhodosporidium toruloides].	Vacuolar assembly protein DID2.	0.658
BN2166_0016610	BN2166_0037580	A0A0K3CBA0	A0A0K3CH27	annotation not available	Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.586
BN2166_0016610	BN2166_0042390	A0A0K3CBA0	A0A0K3CHH7	annotation not available	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.997
BN2166_0016610	BN2166_0060320	A0A0K3CBA0	A0A0K3CSK3	annotation not available	ADP-ribosylation factor 3; Belongs to the small GTPase superfamily. Arf family.	0.484
BN2166_0017240	BN2166_0044200	A0A0K3CAH4	A0A0K3CFQ7	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Vacuolar assembly protein DID2.	0.628
BN2166_0017240	BN2166_0050910	A0A0K3CAH4	A0A0K3CLA0	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	annotation not available	0.989
BN2166_0017950	BN2166_0044460	A0A0K3C891	A0A0K3CJB0	Vacuolar assembling/sorting protein VPS16.	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	0.974
BN2166_0017950	BN2166_0055980	A0A0K3C891	A0A0K3CM11	Vacuolar assembling/sorting protein VPS16.	annotation not available	0.659
BN2166_0017950	BN2166_0063830	A0A0K3C891	A0A0K3CP93	Vacuolar assembling/sorting protein VPS16.	annotation not available	0.418
BN2166_0037580	BN2166_0016610	A0A0K3CH27	A0A0K3CBA0	Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	annotation not available	0.586
BN2166_0037580	BN2166_0042390	A0A0K3CH27	A0A0K3CHH7	Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.552
BN2166_0037580	BN2166_0043070	A0A0K3CH27	A0A0K3CMQ8	Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Uncharacterized protein.	0.538
BN2166_0042390	BN2166_0016610	A0A0K3CHH7	A0A0K3CBA0	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	annotation not available	0.997
BN2166_0042390	BN2166_0037580	A0A0K3CHH7	A0A0K3CH27	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Dynamin central region-domain containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.552
BN2166_0042390	BN2166_0044460	A0A0K3CHH7	A0A0K3CJB0	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.	0.747

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