STRINGSTRING
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0002600annotation not available (1148 aa)
BN2166_0002700BY PROTMAP: gi|342319356|gb|EGU11305.1| polyketide synthase [Rhodotorula glutinis ATCC 204091]. (471 aa)
BN2166_0005500BY PROTMAP: gi|647396266|emb|CDR38290.1| RHTO0S03e07712g1_1 [Rhodosporidium toruloides]. (566 aa)
BN2166_0006650annotation not available (234 aa)
BN2166_0000010annotation not available (215 aa)
BN2166_0016250t-SNARE; Belongs to the syntaxin family. (450 aa)
BN2166_0005610annotation not available (528 aa)
BN2166_0006810BY PROTMAP: gi|342320670|gb|EGU12609.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1120 aa)
BN2166_0009880Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (768 aa)
BN2166_0013190annotation not available (388 aa)
BN2166_0015040annotation not available (1646 aa)
BN2166_0013910annotation not available (216 aa)
BN2166_0018190Heterokaryon incompatibility protein Het-C-domain containing protein. (796 aa)
BN2166_0000970BY PROTMAP: gi|647395598|emb|CDR37148.1| RHTO0S02e11232g1_1 [Rhodosporidium toruloides]. (151 aa)
BN2166_0021140FGENESH: predicted gene_3.565 protein. (1757 aa)
BN2166_0033500BY PROTMAP: gi|647399930|emb|CDR44914.1| RHTO0S10e03114g2_1 [Rhodosporidium toruloides]. (378 aa)
BN2166_0025290FGENESH: predicted gene_5.74 protein. (1104 aa)
BN2166_0033750FGENESH: predicted gene_6.297 protein. (977 aa)
BN2166_0022280Uncharacterized protein. (171 aa)
BN2166_0034750Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (2264 aa)
BN2166_0030490Protein YIP. (262 aa)
BN2166_0013670Emp24/gp25L/p24 family/GOLD-domain containing protein. (199 aa)
BN2166_0040550Uncharacterized protein. (444 aa)
BN2166_0036090Phosphatidylinositol 3-and 4-kinase-domain containing protein. (770 aa)
BN2166_0032130BY PROTMAP: gi|595441971|gb|EXX54114.1| Ypt7p [Rhizophagus irregularis DAOM 197198w]. (183 aa)
BN2166_0044350Snf7-domain containing protein. (220 aa)
BN2166_0035060Uncharacterized protein. (151 aa)
BN2166_0047600FGENESH: predicted gene_9.106 protein; Belongs to the syntaxin family. (263 aa)
BN2166_0047950Pep3/Vps18/deep orange family-domain containing protein. (1140 aa)
BN2166_0039360annotation not available (635 aa)
BN2166_0054100t-SNARE coiled-coil homology domain-containing protein. (256 aa)
BN2166_0047590Uncharacterized protein. (1034 aa)
BN2166_0030370Uncharacterized protein; Belongs to the synaptobrevin family. (230 aa)
BN2166_0048040BY PROTMAP: gi|342321376|gb|EGU13310.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (582 aa)
BN2166_0045630annotation not available (1118 aa)
BN2166_0044460Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family. (1002 aa)
BN2166_0050090BY PROTMAP: gi|342321297|gb|EGU13231.1| putative Transporter [Rhodotorula glutinis ATCC 204091]. (2200 aa)
BN2166_0046360BY PROTMAP: gi|342319430|gb|EGU11379.1| Synaptobrevin [Rhodotorula glutinis ATCC 204091]. (279 aa)
BN2166_0048810Protein transporter SEC13; Belongs to the WD repeat SEC13 family. (336 aa)
BN2166_0056940annotation not available (509 aa)
BN2166_0052160BY PROTMAP: gi|647394553|emb|CDR35784.1| RHTO0S01e07030g1_1 [Rhodosporidium toruloides]. (126 aa)
BN2166_0064400BY PROTMAP: gi|342319556|gb|EGU11504.1| GTP-binding protein RAB5 [Rhodotorula glutinis ATCC 204091]. (211 aa)
BN2166_0056930annotation not available (230 aa)
BN2166_0041570annotation not available (229 aa)
BN2166_0058180Uncharacterized protein. (395 aa)
BN2166_0046770BY PROTMAP: gi|342320021|gb|EGU11965.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (581 aa)
BN2166_0065230Belongs to the STXBP/unc-18/SEC1 family. (936 aa)
BN2166_0074640annotation not available (1054 aa)
BN2166_0072230Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (227 aa)
BN2166_0073720Syntaxin 6, N-terminal-domain containing protein. (253 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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