13 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0029150	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (134 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0049480	FGENESH: predicted gene_9.294 protein. (72 aa)
	BN2166_0052490	Small ubiquitin-related modifier. (102 aa)
	BN2166_0064220	annotation not available (126 aa)
	BN2166_0072130	Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by the MOCS3 homolog UBA4. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target pr [...] (127 aa)
	BN2166_0067830	FGENESH: predicted gene_15.64 protein. (72 aa)
	BN2166_0057410	FGENESH: predicted gene_11.237 protein. (749 aa)
	BN2166_0051480	FGENESH: predicted gene_9.494 protein. (127 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0051480	A0A0K3C6J0	A0A0K3CKT7	annotation not available	FGENESH: predicted gene_9.494 protein.	0.747
BN2166_0003390	BN2166_0052490	A0A0K3C6J0	A0A0K3CKC9	annotation not available	Small ubiquitin-related modifier.	0.747
BN2166_0003390	BN2166_0057410	A0A0K3C6J0	A0A0K3CN37	annotation not available	FGENESH: predicted gene_11.237 protein.	0.994
BN2166_0003390	BN2166_0064220	A0A0K3C6J0	A0A0K3CTK7	annotation not available	annotation not available	0.998
BN2166_0003390	BN2166_0067830	A0A0K3C6J0	A0A0K3CQF4	annotation not available	FGENESH: predicted gene_15.64 protein.	0.963
BN2166_0005040	BN2166_0018570	A0A0K3C739	A0A0K3CFL1	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0005040	BN2166_0029020	A0A0K3C739	A0A0K3CII4	Uncharacterized protein.	Ubiquitin-related domain-containing protein.	0.773
BN2166_0005040	BN2166_0042310	A0A0K3C739	A0A0K3CIR4	Uncharacterized protein.	FGENESH: predicted gene_8.86 protein.	0.773
BN2166_0005040	BN2166_0051480	A0A0K3C739	A0A0K3CKT7	Uncharacterized protein.	FGENESH: predicted gene_9.494 protein.	0.727
BN2166_0005040	BN2166_0052490	A0A0K3C739	A0A0K3CKC9	Uncharacterized protein.	Small ubiquitin-related modifier.	0.727
BN2166_0005040	BN2166_0057410	A0A0K3C739	A0A0K3CN37	Uncharacterized protein.	FGENESH: predicted gene_11.237 protein.	0.970
BN2166_0005040	BN2166_0064220	A0A0K3C739	A0A0K3CTK7	Uncharacterized protein.	annotation not available	0.980
BN2166_0005040	BN2166_0067830	A0A0K3C739	A0A0K3CQF4	Uncharacterized protein.	FGENESH: predicted gene_15.64 protein.	0.947
BN2166_0018570	BN2166_0003390	A0A0K3CFL1	A0A0K3C6J0	Uncharacterized protein.	annotation not available	0.982
BN2166_0018570	BN2166_0005040	A0A0K3CFL1	A0A0K3C739	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0018570	BN2166_0051480	A0A0K3CFL1	A0A0K3CKT7	Uncharacterized protein.	FGENESH: predicted gene_9.494 protein.	0.699
BN2166_0018570	BN2166_0052490	A0A0K3CFL1	A0A0K3CKC9	Uncharacterized protein.	Small ubiquitin-related modifier.	0.699

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