STRINGSTRING
BN2166_0057770 BN2166_0057770 BN2166_0073990 BN2166_0073990 BN2166_0054220 BN2166_0054220 BN2166_0053770 BN2166_0053770 BN2166_0068180 BN2166_0068180 BN2166_0069940 BN2166_0069940 BN2166_0069040 BN2166_0069040 BN2166_0068640 BN2166_0068640 BN2166_0065080 BN2166_0065080 BN2166_0049470 BN2166_0049470 BN2166_0064430 BN2166_0064430 BN2166_0049320 BN2166_0049320 BN2166_0063380 BN2166_0063380 BN2166_0047320 BN2166_0047320 BN2166_0065140 BN2166_0065140 BN2166_0046520 BN2166_0046520 BN2166_0061230 BN2166_0061230 BN2166_0063240 BN2166_0063240 BN2166_0056060 BN2166_0056060 BN2166_0054210 BN2166_0054210 BN2166_0053210 BN2166_0053210 BN2166_0065100 BN2166_0065100 BN2166_0040320 BN2166_0040320 BN2166_0038770 BN2166_0038770 BN2166_0037770 BN2166_0037770 BN2166_0052480 BN2166_0052480 BN2166_0061300 BN2166_0061300 BN2166_0053390 BN2166_0053390 BN2166_0035470 BN2166_0035470 BN2166_0050130 BN2166_0050130 BN2166_0047530 BN2166_0047530 BN2166_0057700 BN2166_0057700 BN2166_0049940 BN2166_0049940 BN2166_0046630 BN2166_0046630 BN2166_0031620 BN2166_0031620 BN2166_0049190 BN2166_0049190 BN2166_0029820 BN2166_0029820 BN2166_0043630 BN2166_0043630 BN2166_0053400 BN2166_0053400 BN2166_0044840 BN2166_0044840 BN2166_0039210 BN2166_0039210 BN2166_0023920 BN2166_0023920 BN2166_0037630 BN2166_0037630 BN2166_0023320 BN2166_0023320 BN2166_0037130 BN2166_0037130 BN2166_0021170 BN2166_0021170 BN2166_0034160 BN2166_0034160 BN2166_0033230 BN2166_0033230 BN2166_0032610 BN2166_0032610 BN2166_0032230 BN2166_0032230 BN2166_0030130 BN2166_0030130 BN2166_0029080 BN2166_0029080 BN2166_0027880 BN2166_0027880 BN2166_0031190 BN2166_0031190 BN2166_0012170 BN2166_0012170 BN2166_0025810 BN2166_0025810 BN2166_0024630 BN2166_0024630 BN2166_0023880 BN2166_0023880 BN2166_0023260 BN2166_0023260 BN2166_0023210 BN2166_0023210 BN2166_0023480 BN2166_0023480 BN2166_0009020 BN2166_0009020 BN2166_0007820 BN2166_0007820 BN2166_0032950 BN2166_0032950 BN2166_0020760 BN2166_0020760 BN2166_0020460 BN2166_0020460 BN2166_0023790 BN2166_0023790 BN2166_0019410 BN2166_0019410 BN2166_0020030 BN2166_0020030 BN2166_0004870 BN2166_0004870 BN2166_0030100 BN2166_0030100 BN2166_0018480 BN2166_0018480 BN2166_0020840 BN2166_0020840 BN2166_0017210 BN2166_0017210 BN2166_0016710 BN2166_0016710 BN2166_0002420 BN2166_0002420 BN2166_0017180 BN2166_0017180 BN2166_0001870 BN2166_0001870 BN2166_0018140 BN2166_0018140 BN2166_0000620 BN2166_0000620 BN2166_0016890 BN2166_0016890 BN2166_0012160 BN2166_0012160 BN2166_0015340 BN2166_0015340 BN2166_0015290 BN2166_0015290 BN2166_0014990 BN2166_0014990 BN2166_0012480 BN2166_0012480 BN2166_0023250 BN2166_0023250 BN2166_0013790 BN2166_0013790 BN2166_0011030 BN2166_0011030 BN2166_0012640 BN2166_0012640 BN2166_0012590 BN2166_0012590 BN2166_0008610 BN2166_0008610 BN2166_0009640 BN2166_0009640 BN2166_0017050 BN2166_0017050 BN2166_0004860 BN2166_0004860 BN2166_0016150 BN2166_0016150 BN2166_0015000 BN2166_0015000 BN2166_0014650 BN2166_0014650 BN2166_0005340 BN2166_0005340 BN2166_0000780 BN2166_0000780 BN2166_0002590 BN2166_0002590 BN2166_0010650 BN2166_0010650 BN2166_0010350 BN2166_0010350 BN2166_0001440 BN2166_0001440 BN2166_0003850 BN2166_0003850 BN2166_0002550 BN2166_0002550 BN2166_0001050 BN2166_0001050 BN2166_0000600 BN2166_0000600 BN2166_0000300 BN2166_0000300 BN2166_0046550 BN2166_0046550 BN2166_0056660 BN2166_0056660 BN2166_0044660 BN2166_0044660 BN2166_0074360 BN2166_0074360 BN2166_0069920 BN2166_0069920 BN2166_0061370 BN2166_0061370
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0057770DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1450 aa)
BN2166_0073990annotation not available (767 aa)
BN2166_0054220Tr-type G domain-containing protein. (431 aa)
BN2166_0053770BY PROTMAP: gi|647394383|emb|CDR35612.1| RHTO0S01e03246g1_1 [Rhodosporidium toruloides]. (593 aa)
BN2166_0068180Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (187 aa)
BN2166_0069940annotation not available (283 aa)
BN2166_0069040Dcp2, box A domain-domain containing protein. (855 aa)
BN2166_0068640Ribonuclease P/MRP protein subunit. (789 aa)
BN2166_0065080FGENESH: predicted gene_14.58 protein. (344 aa)
BN2166_0049470U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (144 aa)
BN2166_00644303' exoribonuclease family, domain 1-domain containing protein. (346 aa)
BN2166_0049320Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (703 aa)
BN2166_0063380Like-Sm (LSM) domain-containing protein. (127 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0065140Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (382 aa)
BN2166_0046520annotation not available (372 aa)
BN2166_0061230BY PROTMAP: gi|647397743|emb|CDR40979.1| RHTO0S05e10220g1_1 [Rhodosporidium toruloides]. (1547 aa)
BN2166_0063240PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (746 aa)
BN2166_0056060Belongs to the GDA1/CD39 NTPase family. (566 aa)
BN2166_0054210FGENESH: predicted gene_10.258 protein. (317 aa)
BN2166_0053210Ribosomal protein S5 domain 2-type fold. (331 aa)
BN2166_0065100Belongs to the DEAD box helicase family. (556 aa)
BN2166_0040320Uncharacterized protein. (1036 aa)
BN2166_0038770BY PROTMAP: gi|342320478|gb|EGU12418.1| putative NUDIX domain [Rhodotorula glutinis ATCC 204091]; Belongs to the Nudix hydrolase family. (151 aa)
BN2166_0037770FGENESH: predicted gene_7.162 protein. (539 aa)
BN2166_0052480Exosome non-catalytic core component. (301 aa)
BN2166_0061300annotation not available (935 aa)
BN2166_0053390BY PROTMAP: gi|647394422|emb|CDR35651.1| RHTO0S01e04082g1_1 [Rhodosporidium toruloides]. (1089 aa)
BN2166_0035470FGENESH: predicted gene_6.469 protein. (636 aa)
BN2166_0050130Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (433 aa)
BN2166_0047530annotation not available (1050 aa)
BN2166_0057700Uncharacterized protein. (309 aa)
BN2166_0049940BY PROTMAP: gi|342321305|gb|EGU13239.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1681 aa)
BN2166_0046630Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (173 aa)
BN2166_0031620Uncharacterized protein. (330 aa)
BN2166_0049190annotation not available (676 aa)
BN2166_0029820FGENESH: predicted gene_5.527 protein. (243 aa)
BN2166_0043630FGENESH: predicted gene_8.218 protein. (867 aa)
BN2166_0053400FGENESH: predicted gene_10.177 protein. (465 aa)
BN2166_0044840Ribosomal protein S5 domain 2-type fold. (298 aa)
BN2166_0039210annotation not available (319 aa)
BN2166_0023920annotation not available (404 aa)
BN2166_0037630BY PROTMAP: gi|342320526|gb|EGU12466.1| ATP dependent helicase [Rhodotorula glutinis ATCC 204091]. (1086 aa)
BN2166_0023320Endonuclease. (360 aa)
BN2166_0037130Smg-4/UPF3 family-domain containing protein. (444 aa)
BN2166_0021170PINc domain-containing protein. (1482 aa)
BN2166_0034160BY PROTMAP: gi|814543230|emb|CEQ39607.1| SPOSA6832_01148 [Sporidiobolus salmonicolor]. (714 aa)
BN2166_0033230annotation not available (406 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0032230BY PROTMAP: gi|342319624|gb|EGU11571.1| YjeF-related protein [Rhodotorula glutinis ATCC 204091]. (560 aa)
BN2166_0030130Uncharacterized protein. (235 aa)
BN2166_0029080annotation not available (184 aa)
BN2166_0027880NPL4 family-domain containing protein. (745 aa)
BN2166_0031190BY PROTMAP: gi|472585042|gb|EMS22608.1| uridine phosphorylase [Rhodosporidium toruloides NP11]. (244 aa)
BN2166_0012170FGENESH: predicted gene_2.386 protein. (547 aa)
BN2166_0025810Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (259 aa)
BN2166_0024630Inosine/uridine-preferring nucleoside hydrolase domain-containing protein. (448 aa)
BN2166_0023880annotation not available (662 aa)
BN2166_0023260FGENESH: predicted gene_4.102 protein. (252 aa)
BN2166_0023210BY PROTMAP: gi|342319808|gb|EGU11754.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1394 aa)
BN2166_0023480BY PROTMAP: gi|647402165|emb|CDR48445.1| RHTO0S18e00210g1_1 [Rhodosporidium toruloides]. (839 aa)
BN2166_0009020mRNA transport regulator 3. (270 aa)
BN2166_0007820BY PROTMAP: gi|342319288|gb|EGU11237.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (660 aa)
BN2166_0032950annotation not available (781 aa)
BN2166_0020760Nuclear cap-binding protein subunit 2. (197 aa)
BN2166_0020460Scavenger mRNA decapping enzyme. (328 aa)
BN2166_0023790FGENESH: predicted gene_4.155 protein. (742 aa)
BN2166_0019410BY PROTMAP: gi|342320107|gb|EGU12050.1| Endopeptidase [Rhodotorula glutinis ATCC 204091]; Belongs to the AAA ATPase family. (409 aa)
BN2166_0020030Ribonuclease H2, subunit B. (387 aa)
BN2166_0004870FGENESH: predicted gene_1.487 protein. (1221 aa)
BN2166_00301005'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1144 aa)
BN2166_0018480annotation not available (944 aa)
BN2166_0020840Armadillo-type fold. (949 aa)
BN2166_0017210annotation not available (646 aa)
BN2166_0016710BY PROTMAP: gi|342319103|gb|EGU11054.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (678 aa)
BN2166_0002420annotation not available (545 aa)
BN2166_0017180Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (346 aa)
BN2166_0001870PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1176 aa)
BN2166_0018140Endonuclease/exonuclease/phosphatase. (763 aa)
BN2166_0000620BY PROTMAP: gi|342320614|gb|EGU12553.1| Translation repressor [Rhodotorula glutinis ATCC 204091]. (1271 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0012160BY PROTMAP: gi|647394748|emb|CDR35982.1| RHTO0S01e11518g1_1 [Rhodosporidium toruloides]. (995 aa)
BN2166_0015340FGENESH: predicted gene_2.703 protein. (119 aa)
BN2166_0015290P-loop containing nucleoside triphosphate hydrolase protein. (1157 aa)
BN2166_0014990Ribonuclease T2-like protein; Belongs to the RNase T2 family. (424 aa)
BN2166_0012480annotation not available (449 aa)
BN2166_0023250annotation not available (1979 aa)
BN2166_0013790annotation not available (625 aa)
BN2166_0011030BY PROTMAP: gi|342319947|gb|EGU11892.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (288 aa)
BN2166_0012640annotation not available (817 aa)
BN2166_0012590annotation not available (455 aa)
BN2166_0008610Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (1494 aa)
BN2166_0009640BY PROTMAP: gi|647399839|emb|CDR44810.1| RHTO0S10e01024g1_1 [Rhodosporidium toruloides]. (454 aa)
BN2166_0017050Mitotic control protein dis3; Belongs to the RNR ribonuclease family. (1020 aa)
BN2166_0004860XRN_N domain-containing protein. (205 aa)
BN2166_0016150annotation not available (1120 aa)
BN2166_0015000Topoisomerase II-associated protein PAT1-domain containing protein. (1023 aa)
BN2166_0014650annotation not available (280 aa)
BN2166_0005340GDA1/CD39 (Nucleoside phosphatase) family-domain containing protein; Belongs to the GDA1/CD39 NTPase family. (927 aa)
BN2166_0000780Bis(5'-adenosyl)-triphosphatase. (206 aa)
BN2166_0002590NUDIX hydrolase domain-like protein. (474 aa)
BN2166_00106503'-5' exonuclease domain-containing protein. (966 aa)
BN2166_0010350Putative regulation of transcription from Pol II promoter-related protein. (445 aa)
BN2166_0001440annotation not available (361 aa)
BN2166_0003850RAI1 like PD-(D/E)XK nuclease-domain containing protein. (555 aa)
BN2166_0002550HRDC-like protein. (105 aa)
BN2166_0001050Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
BN2166_0000600Uncharacterized protein. (1420 aa)
BN2166_0000300BY PROTMAP: gi|342320601|gb|EGU12540.1| putative dUTPase Dut [Rhodotorula glutinis ATCC 204091]. (259 aa)
BN2166_0046550RHTO0S21e02696g1_1. (177 aa)
BN2166_0056660Histone H2A; Belongs to the histone H2A family. (159 aa)
BN2166_0044660RHTO0S02e05424g1_1. (311 aa)
BN2166_0074360BY PROTMAP: gi|472584802|gb|EMS22377.1| SAM domain protein [Rhodosporidium toruloides NP11]. (895 aa)
BN2166_0069920FGENESH: predicted gene_16.18 protein. (53 aa)
BN2166_0061370FGENESH: predicted gene_12.297 protein. (873 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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